STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRP1LDL receptor related protein 1. (4544 aa)    
Predicted Functional Partners:
LRPAP1
LDL receptor related protein associated protein 1.
    
 0.986
APOE
Apolipoprotein E.
    
 0.976
DKK1
Dickkopf WNT signaling pathway inhibitor 1.
    
 0.970
LPL
Lipoprotein lipase.
    
 0.968
AGRN
Agrin.
    
 0.957
AXIN2
Axin 2.
    
 0.943
AXIN1
Axin 1.
    
 0.943
PCSK9
Proprotein convertase subtilisin/kexin type 9.
    
 0.942
RELN
Reelin.
    
 0.934
LDLRAP1
Low density lipoprotein receptor adaptor protein 1.
    
 0.926
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.