VIRMA protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VIRMA

Vir like m6A methyltransferase associated. (1757 aa)

Predicted Functional Partners:

ZC3H13

0.998

THOC2

0.995

ENSODEP00000001421

0.994

LOC101573399

0.994

METTL3

0.990

ENSODEP00000000318

0.987

ENSODEP00000000515

0.987

ENSODEP00000004682

0.987

ENSODEP00000006482

0.987

ENSODEP00000010771

0.987

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000318	ENSODEP00000001421	ENSODEP00000000318	ENSODEP00000001421	annotation not available	annotation not available	0.969
ENSODEP00000000318	LOC101573399	ENSODEP00000000318	ENSODEP00000002491	annotation not available	annotation not available	0.969
ENSODEP00000000318	METTL3	ENSODEP00000000318	ENSODEP00000001806	annotation not available	Methyltransferase like 3.	0.979
ENSODEP00000000318	THOC2	ENSODEP00000000318	ENSODEP00000003226	annotation not available	THO complex 2.	0.968
ENSODEP00000000318	VIRMA	ENSODEP00000000318	ENSODEP00000003191	annotation not available	Vir like m6A methyltransferase associated.	0.987
ENSODEP00000000318	ZC3H13	ENSODEP00000000318	ENSODEP00000006945	annotation not available	Zinc finger CCCH-type containing 13.	0.990
ENSODEP00000000515	ENSODEP00000001421	ENSODEP00000000515	ENSODEP00000001421	annotation not available	annotation not available	0.969
ENSODEP00000000515	LOC101573399	ENSODEP00000000515	ENSODEP00000002491	annotation not available	annotation not available	0.969
ENSODEP00000000515	METTL3	ENSODEP00000000515	ENSODEP00000001806	annotation not available	Methyltransferase like 3.	0.979
ENSODEP00000000515	THOC2	ENSODEP00000000515	ENSODEP00000003226	annotation not available	THO complex 2.	0.968
ENSODEP00000000515	VIRMA	ENSODEP00000000515	ENSODEP00000003191	annotation not available	Vir like m6A methyltransferase associated.	0.987
ENSODEP00000000515	ZC3H13	ENSODEP00000000515	ENSODEP00000006945	annotation not available	Zinc finger CCCH-type containing 13.	0.990
ENSODEP00000001421	ENSODEP00000000318	ENSODEP00000001421	ENSODEP00000000318	annotation not available	annotation not available	0.969
ENSODEP00000001421	ENSODEP00000000515	ENSODEP00000001421	ENSODEP00000000515	annotation not available	annotation not available	0.969
ENSODEP00000001421	ENSODEP00000004682	ENSODEP00000001421	ENSODEP00000004682	annotation not available	annotation not available	0.969
ENSODEP00000001421	ENSODEP00000006482	ENSODEP00000001421	ENSODEP00000006482	annotation not available	annotation not available	0.969
ENSODEP00000001421	ENSODEP00000010771	ENSODEP00000001421	ENSODEP00000010771	annotation not available	annotation not available	0.969
ENSODEP00000001421	METTL3	ENSODEP00000001421	ENSODEP00000001806	annotation not available	Methyltransferase like 3.	0.948
ENSODEP00000001421	THOC2	ENSODEP00000001421	ENSODEP00000003226	annotation not available	THO complex 2.	0.929
ENSODEP00000001421	VIRMA	ENSODEP00000001421	ENSODEP00000003191	annotation not available	Vir like m6A methyltransferase associated.	0.994