Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LYSMD3LysM domain containing 3. (298 aa)    
Predicted Functional Partners:
FIBCD1
Fibrinogen C domain containing 1.
      
 0.758
PCDH18
Protocadherin 18.
      
 0.606
B3GNT7
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7.
      
 0.604
LYSMD2
LysM domain containing 2.
      
 0.603
LYSMD1
LysM domain containing 1.
      
 0.602
ARRDC3
Arrestin domain containing 3.
      
 0.587
PAN3
poly(A) specific ribonuclease subunit PAN3.
      
 0.551
PIWIL4
Piwi like RNA-mediated gene silencing 4.
      
 0.541
ZNF646
Zinc finger protein 646.
      
 0.540
FAM174B
Family with sequence similarity 174 member B.
      
 0.539
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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