ENSODEP00000003239 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSODEP00000003239

annotation not available (123 aa)

Predicted Functional Partners:

RAPGEF4

0.989

Krit1

0.986

RAP1GAP

0.986

APBB1IP

0.985

RASIP1

0.981

RAPGEF2

0.980

ENSODEP00000002042

0.980

ENSODEP00000004367

0.980

ENSODEP00000005331

0.980

ENSODEP00000008064

0.980

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APBB1IP	ENSODEP00000002042	ENSODEP00000003000	ENSODEP00000002042	Amyloid beta precursor protein binding family B member 1 interacting protein.	annotation not available	0.971
APBB1IP	ENSODEP00000003239	ENSODEP00000003000	ENSODEP00000003239	Amyloid beta precursor protein binding family B member 1 interacting protein.	annotation not available	0.985
APBB1IP	ENSODEP00000004367	ENSODEP00000003000	ENSODEP00000004367	Amyloid beta precursor protein binding family B member 1 interacting protein.	annotation not available	0.971
APBB1IP	ENSODEP00000005331	ENSODEP00000003000	ENSODEP00000005331	Amyloid beta precursor protein binding family B member 1 interacting protein.	annotation not available	0.971
APBB1IP	ENSODEP00000008064	ENSODEP00000003000	ENSODEP00000008064	Amyloid beta precursor protein binding family B member 1 interacting protein.	annotation not available	0.971
APBB1IP	RAP1GAP	ENSODEP00000003000	ENSODEP00000021319	Amyloid beta precursor protein binding family B member 1 interacting protein.	RAP1 GTPase activating protein.	0.407
APBB1IP	RAPGEF2	ENSODEP00000003000	ENSODEP00000000738	Amyloid beta precursor protein binding family B member 1 interacting protein.	Rap guanine nucleotide exchange factor 2.	0.469
APBB1IP	RAPGEF4	ENSODEP00000003000	ENSODEP00000014054	Amyloid beta precursor protein binding family B member 1 interacting protein.	Rap guanine nucleotide exchange factor 4.	0.440
ENSODEP00000002042	APBB1IP	ENSODEP00000002042	ENSODEP00000003000	annotation not available	Amyloid beta precursor protein binding family B member 1 interacting protein.	0.971
ENSODEP00000002042	ENSODEP00000003239	ENSODEP00000002042	ENSODEP00000003239	annotation not available	annotation not available	0.980
ENSODEP00000002042	Krit1	ENSODEP00000002042	ENSODEP00000001376	annotation not available	KRIT1 ankyrin repeat containing.	0.973
ENSODEP00000002042	RAP1GAP	ENSODEP00000002042	ENSODEP00000021319	annotation not available	RAP1 GTPase activating protein.	0.971
ENSODEP00000002042	RAPGEF2	ENSODEP00000002042	ENSODEP00000000738	annotation not available	Rap guanine nucleotide exchange factor 2.	0.970
ENSODEP00000002042	RAPGEF4	ENSODEP00000002042	ENSODEP00000014054	annotation not available	Rap guanine nucleotide exchange factor 4.	0.982
ENSODEP00000002042	RASIP1	ENSODEP00000002042	ENSODEP00000024141	annotation not available	Ras interacting protein 1.	0.967
ENSODEP00000003239	APBB1IP	ENSODEP00000003239	ENSODEP00000003000	annotation not available	Amyloid beta precursor protein binding family B member 1 interacting protein.	0.985
ENSODEP00000003239	ENSODEP00000002042	ENSODEP00000003239	ENSODEP00000002042	annotation not available	annotation not available	0.980
ENSODEP00000003239	ENSODEP00000004367	ENSODEP00000003239	ENSODEP00000004367	annotation not available	annotation not available	0.980
ENSODEP00000003239	ENSODEP00000005331	ENSODEP00000003239	ENSODEP00000005331	annotation not available	annotation not available	0.980
ENSODEP00000003239	ENSODEP00000008064	ENSODEP00000003239	ENSODEP00000008064	annotation not available	annotation not available	0.980