STX6 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

STX6

Syntaxin 6. (255 aa)

Predicted Functional Partners:

STX16

0.999

VTI1A

0.999

VTI1B

0.999

VAMP8

0.995

STX12

0.994

NAPA

0.994

NAPB

0.993

ENSODEP00000017394

0.993

ENSODEP00000001781

0.992

ENSODEP00000017069

0.992

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001781	ENSODEP00000017394	ENSODEP00000001781	ENSODEP00000017394	annotation not available	annotation not available	0.661
ENSODEP00000001781	NAPA	ENSODEP00000001781	ENSODEP00000011440	annotation not available	NSF attachment protein alpha.	0.906
ENSODEP00000001781	NAPB	ENSODEP00000001781	ENSODEP00000014983	annotation not available	NSF attachment protein beta.	0.888
ENSODEP00000001781	STX12	ENSODEP00000001781	ENSODEP00000005537	annotation not available	Syntaxin 12.	0.955
ENSODEP00000001781	STX16	ENSODEP00000001781	ENSODEP00000000445	annotation not available	Syntaxin 16.	0.982
ENSODEP00000001781	STX6	ENSODEP00000001781	ENSODEP00000003255	annotation not available	Syntaxin 6.	0.992
ENSODEP00000001781	VAMP8	ENSODEP00000001781	ENSODEP00000004070	annotation not available	Vesicle associated membrane protein 8.	0.912
ENSODEP00000001781	VTI1A	ENSODEP00000001781	ENSODEP00000013518	annotation not available	Vesicle transport through interaction with t-SNAREs 1A.	0.988
ENSODEP00000001781	VTI1B	ENSODEP00000001781	ENSODEP00000017814	annotation not available	Vesicle transport through interaction with t-SNAREs 1B.	0.951
ENSODEP00000017069	ENSODEP00000017394	ENSODEP00000017069	ENSODEP00000017394	annotation not available	annotation not available	0.661
ENSODEP00000017069	NAPA	ENSODEP00000017069	ENSODEP00000011440	annotation not available	NSF attachment protein alpha.	0.906
ENSODEP00000017069	NAPB	ENSODEP00000017069	ENSODEP00000014983	annotation not available	NSF attachment protein beta.	0.888
ENSODEP00000017069	STX12	ENSODEP00000017069	ENSODEP00000005537	annotation not available	Syntaxin 12.	0.955
ENSODEP00000017069	STX16	ENSODEP00000017069	ENSODEP00000000445	annotation not available	Syntaxin 16.	0.982
ENSODEP00000017069	STX6	ENSODEP00000017069	ENSODEP00000003255	annotation not available	Syntaxin 6.	0.992
ENSODEP00000017069	VAMP8	ENSODEP00000017069	ENSODEP00000004070	annotation not available	Vesicle associated membrane protein 8.	0.912
ENSODEP00000017069	VTI1A	ENSODEP00000017069	ENSODEP00000013518	annotation not available	Vesicle transport through interaction with t-SNAREs 1A.	0.988
ENSODEP00000017069	VTI1B	ENSODEP00000017069	ENSODEP00000017814	annotation not available	Vesicle transport through interaction with t-SNAREs 1B.	0.951
ENSODEP00000017394	ENSODEP00000001781	ENSODEP00000017394	ENSODEP00000001781	annotation not available	annotation not available	0.661
ENSODEP00000017394	ENSODEP00000017069	ENSODEP00000017394	ENSODEP00000017069	annotation not available	annotation not available	0.661