SKIDA1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

SKIDA1

SKI/DACH domain containing 1. (674 aa)

Predicted Functional Partners:

SUZ12

0.948

PHF19

0.944

MYSM1

0.901

CPOX

0.898

ENSODEP00000000587

0.890

Mtf2

0.890

PBRM1

0.883

ARID2

0.868

ENSODEP00000017549

0.862

Ezh1

0.862

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID2	MYSM1	ENSODEP00000005255	ENSODEP00000015759	AT-rich interaction domain 2.	Myb like, SWIRM and MPN domains 1.	0.974
ARID2	PBRM1	ENSODEP00000005255	ENSODEP00000011106	AT-rich interaction domain 2.	Polybromo 1.	0.999
ARID2	SKIDA1	ENSODEP00000005255	ENSODEP00000003261	AT-rich interaction domain 2.	SKI/DACH domain containing 1.	0.868
CPOX	SKIDA1	ENSODEP00000006346	ENSODEP00000003261	Coproporphyrinogen oxidase.	SKI/DACH domain containing 1.	0.898
ENSODEP00000000587	ENSODEP00000017549	ENSODEP00000000587	ENSODEP00000017549	annotation not available	annotation not available	0.961
ENSODEP00000000587	Ezh1	ENSODEP00000000587	ENSODEP00000024572	annotation not available	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	0.961
ENSODEP00000000587	PHF19	ENSODEP00000000587	ENSODEP00000003679	annotation not available	PHD finger protein 19.	0.746
ENSODEP00000000587	SKIDA1	ENSODEP00000000587	ENSODEP00000003261	annotation not available	SKI/DACH domain containing 1.	0.890
ENSODEP00000000587	SUZ12	ENSODEP00000000587	ENSODEP00000018269	annotation not available	SUZ12 polycomb repressive complex 2 subunit.	0.987
ENSODEP00000017549	ENSODEP00000000587	ENSODEP00000017549	ENSODEP00000000587	annotation not available	annotation not available	0.961
ENSODEP00000017549	Mtf2	ENSODEP00000017549	ENSODEP00000007626	annotation not available	annotation not available	0.961
ENSODEP00000017549	PHF19	ENSODEP00000017549	ENSODEP00000003679	annotation not available	PHD finger protein 19.	0.981
ENSODEP00000017549	SKIDA1	ENSODEP00000017549	ENSODEP00000003261	annotation not available	SKI/DACH domain containing 1.	0.862
ENSODEP00000017549	SUZ12	ENSODEP00000017549	ENSODEP00000018269	annotation not available	SUZ12 polycomb repressive complex 2 subunit.	0.994
Ezh1	ENSODEP00000000587	ENSODEP00000024572	ENSODEP00000000587	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	annotation not available	0.961
Ezh1	Mtf2	ENSODEP00000024572	ENSODEP00000007626	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	annotation not available	0.974
Ezh1	PHF19	ENSODEP00000024572	ENSODEP00000003679	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	PHD finger protein 19.	0.987
Ezh1	SKIDA1	ENSODEP00000024572	ENSODEP00000003261	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	SKI/DACH domain containing 1.	0.862
Ezh1	SUZ12	ENSODEP00000024572	ENSODEP00000018269	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	SUZ12 polycomb repressive complex 2 subunit.	0.997
MYSM1	ARID2	ENSODEP00000015759	ENSODEP00000005255	Myb like, SWIRM and MPN domains 1.	AT-rich interaction domain 2.	0.974