ENSODEP00000003264 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000003264

annotation not available (88 aa)

Predicted Functional Partners:

ENSODEP00000001256

0.735

ENSODEP00000001862

0.735

BCAP31

0.735

VAPB

0.703

VAPA

0.695

ENSODEP00000020611

0.690

TM7SF2

0.677

LMAN1

0.674

STX5

0.672

RHOD

0.669

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCAP31	ENSODEP00000001256	ENSODEP00000004164	ENSODEP00000001256	B cell receptor associated protein 31.	annotation not available	0.857
BCAP31	ENSODEP00000001862	ENSODEP00000004164	ENSODEP00000001862	B cell receptor associated protein 31.	annotation not available	0.856
BCAP31	ENSODEP00000003264	ENSODEP00000004164	ENSODEP00000003264	B cell receptor associated protein 31.	annotation not available	0.735
BCAP31	ENSODEP00000020611	ENSODEP00000004164	ENSODEP00000020611	B cell receptor associated protein 31.	annotation not available	0.671
BCAP31	LMAN1	ENSODEP00000004164	ENSODEP00000002087	B cell receptor associated protein 31.	Lectin, mannose binding 1.	0.762
BCAP31	RHOD	ENSODEP00000004164	ENSODEP00000024008	B cell receptor associated protein 31.	Ras homolog family member D.	0.431
BCAP31	STX5	ENSODEP00000004164	ENSODEP00000004149	B cell receptor associated protein 31.	Syntaxin 5.	0.649
BCAP31	TM7SF2	ENSODEP00000004164	ENSODEP00000024687	B cell receptor associated protein 31.	Transmembrane 7 superfamily member 2.	0.651
BCAP31	VAPA	ENSODEP00000004164	ENSODEP00000001350	B cell receptor associated protein 31.	VAMP associated protein A.	0.911
BCAP31	VAPB	ENSODEP00000004164	ENSODEP00000000041	B cell receptor associated protein 31.	VAMP associated protein B and C.	0.930
ENSODEP00000001256	BCAP31	ENSODEP00000001256	ENSODEP00000004164	annotation not available	B cell receptor associated protein 31.	0.857
ENSODEP00000001256	ENSODEP00000003264	ENSODEP00000001256	ENSODEP00000003264	annotation not available	annotation not available	0.735
ENSODEP00000001256	ENSODEP00000020611	ENSODEP00000001256	ENSODEP00000020611	annotation not available	annotation not available	0.661
ENSODEP00000001256	LMAN1	ENSODEP00000001256	ENSODEP00000002087	annotation not available	Lectin, mannose binding 1.	0.718
ENSODEP00000001256	RHOD	ENSODEP00000001256	ENSODEP00000024008	annotation not available	Ras homolog family member D.	0.414
ENSODEP00000001256	STX5	ENSODEP00000001256	ENSODEP00000004149	annotation not available	Syntaxin 5.	0.649
ENSODEP00000001256	TM7SF2	ENSODEP00000001256	ENSODEP00000024687	annotation not available	Transmembrane 7 superfamily member 2.	0.651
ENSODEP00000001256	VAPA	ENSODEP00000001256	ENSODEP00000001350	annotation not available	VAMP associated protein A.	0.911
ENSODEP00000001256	VAPB	ENSODEP00000001256	ENSODEP00000000041	annotation not available	VAMP associated protein B and C.	0.912
ENSODEP00000001862	BCAP31	ENSODEP00000001862	ENSODEP00000004164	annotation not available	B cell receptor associated protein 31.	0.856