OSBP2 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OSBP2

Oxysterol binding protein 2. (908 aa)

Predicted Functional Partners:

VAPA

0.973

VAPB

0.936

ENSODEP00000000147

0.871

ENSODEP00000002323

0.871

ENSODEP00000015721

0.871

ENSODEP00000025151

0.871

ENSODEP00000026353

0.871

DMTN

0.854

ENSODEP00000016752

0.814

ENSODEP00000008282

0.671

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMTN	OSBP2	ENSODEP00000007804	ENSODEP00000003333	Dematin actin binding protein.	Oxysterol binding protein 2.	0.854
ENSODEP00000000147	OSBP2	ENSODEP00000000147	ENSODEP00000003333	annotation not available	Oxysterol binding protein 2.	0.871
ENSODEP00000002323	OSBP2	ENSODEP00000002323	ENSODEP00000003333	annotation not available	Oxysterol binding protein 2.	0.871
ENSODEP00000008282	ENSODEP00000016752	ENSODEP00000008282	ENSODEP00000016752	annotation not available	annotation not available	0.997
ENSODEP00000008282	OSBP2	ENSODEP00000008282	ENSODEP00000003333	annotation not available	Oxysterol binding protein 2.	0.671
ENSODEP00000015721	OSBP2	ENSODEP00000015721	ENSODEP00000003333	annotation not available	Oxysterol binding protein 2.	0.871
ENSODEP00000016752	ENSODEP00000008282	ENSODEP00000016752	ENSODEP00000008282	annotation not available	annotation not available	0.997
ENSODEP00000016752	OSBP2	ENSODEP00000016752	ENSODEP00000003333	annotation not available	Oxysterol binding protein 2.	0.814
ENSODEP00000025151	OSBP2	ENSODEP00000025151	ENSODEP00000003333	annotation not available	Oxysterol binding protein 2.	0.871
ENSODEP00000026353	OSBP2	ENSODEP00000026353	ENSODEP00000003333	annotation not available	Oxysterol binding protein 2.	0.871
OSBP2	DMTN	ENSODEP00000003333	ENSODEP00000007804	Oxysterol binding protein 2.	Dematin actin binding protein.	0.854
OSBP2	ENSODEP00000000147	ENSODEP00000003333	ENSODEP00000000147	Oxysterol binding protein 2.	annotation not available	0.871
OSBP2	ENSODEP00000002323	ENSODEP00000003333	ENSODEP00000002323	Oxysterol binding protein 2.	annotation not available	0.871
OSBP2	ENSODEP00000008282	ENSODEP00000003333	ENSODEP00000008282	Oxysterol binding protein 2.	annotation not available	0.671
OSBP2	ENSODEP00000015721	ENSODEP00000003333	ENSODEP00000015721	Oxysterol binding protein 2.	annotation not available	0.871
OSBP2	ENSODEP00000016752	ENSODEP00000003333	ENSODEP00000016752	Oxysterol binding protein 2.	annotation not available	0.814
OSBP2	ENSODEP00000025151	ENSODEP00000003333	ENSODEP00000025151	Oxysterol binding protein 2.	annotation not available	0.871
OSBP2	ENSODEP00000026353	ENSODEP00000003333	ENSODEP00000026353	Oxysterol binding protein 2.	annotation not available	0.871
OSBP2	VAPA	ENSODEP00000003333	ENSODEP00000001350	Oxysterol binding protein 2.	VAMP associated protein A.	0.973
OSBP2	VAPB	ENSODEP00000003333	ENSODEP00000000041	Oxysterol binding protein 2.	VAMP associated protein B and C.	0.936