STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPA1OPA1 mitochondrial dynamin like GTPase. (978 aa)    
Predicted Functional Partners:
PINK1
PTEN induced kinase 1.
    
 0.976
ENSODEP00000016752
annotation not available
   
 0.975
PRKN
Parkin RBR E3 ubiquitin protein ligase.
    
 0.971
ENSODEP00000010090
annotation not available
    
 
 0.951
ENSODEP00000010785
annotation not available
    
 
 0.951
ITSN1
Intersectin 1.
    
 
 0.920
OMA1
OMA1 zinc metallopeptidase.
    
 0.905
ENSODEP00000007510
annotation not available
    
 
 0.885
SAMM50
SAMM50 sorting and assembly machinery component.
    
 0.882
ENSODEP00000014579
annotation not available
    
 0.868
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.