ARMCX4 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

ARMCX4

Armadillo repeat containing X-linked 4. (2193 aa)

Predicted Functional Partners:

MYSM1

0.720

LRGUK

0.719

Tonsl

0.707

ENSODEP00000001869

0.686

FRAS1

0.681

ARID4B

0.681

Arid4a

0.681

ENSODEP00000020185

0.681

ENSODEP00000018110

0.677

ENSODEP00000018830

0.677

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4B	ARMCX4	ENSODEP00000007199	ENSODEP00000003545	AT-rich interaction domain 4B.	Armadillo repeat containing X-linked 4.	0.681
ARID4B	Arid4a	ENSODEP00000007199	ENSODEP00000019395	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.884
ARID4B	ENSODEP00000020185	ENSODEP00000007199	ENSODEP00000020185	AT-rich interaction domain 4B.	annotation not available	0.884
ARID4B	MYSM1	ENSODEP00000007199	ENSODEP00000015759	AT-rich interaction domain 4B.	Myb like, SWIRM and MPN domains 1.	0.798
ARMCX4	ARID4B	ENSODEP00000003545	ENSODEP00000007199	Armadillo repeat containing X-linked 4.	AT-rich interaction domain 4B.	0.681
ARMCX4	Arid4a	ENSODEP00000003545	ENSODEP00000019395	Armadillo repeat containing X-linked 4.	AT-rich interaction domain 4A.	0.681
ARMCX4	ENSODEP00000001869	ENSODEP00000003545	ENSODEP00000001869	Armadillo repeat containing X-linked 4.	annotation not available	0.686
ARMCX4	ENSODEP00000018110	ENSODEP00000003545	ENSODEP00000018110	Armadillo repeat containing X-linked 4.	annotation not available	0.677
ARMCX4	ENSODEP00000018830	ENSODEP00000003545	ENSODEP00000018830	Armadillo repeat containing X-linked 4.	annotation not available	0.677
ARMCX4	ENSODEP00000020185	ENSODEP00000003545	ENSODEP00000020185	Armadillo repeat containing X-linked 4.	annotation not available	0.681
ARMCX4	FRAS1	ENSODEP00000003545	ENSODEP00000005703	Armadillo repeat containing X-linked 4.	Fraser extracellular matrix complex subunit 1.	0.681
ARMCX4	LRGUK	ENSODEP00000003545	ENSODEP00000011659	Armadillo repeat containing X-linked 4.	Leucine rich repeats and guanylate kinase domain containing.	0.719
ARMCX4	MYSM1	ENSODEP00000003545	ENSODEP00000015759	Armadillo repeat containing X-linked 4.	Myb like, SWIRM and MPN domains 1.	0.720
ARMCX4	Tonsl	ENSODEP00000003545	ENSODEP00000017310	Armadillo repeat containing X-linked 4.	Tonsoku like, DNA repair protein.	0.707
Arid4a	ARID4B	ENSODEP00000019395	ENSODEP00000007199	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.884
Arid4a	ARMCX4	ENSODEP00000019395	ENSODEP00000003545	AT-rich interaction domain 4A.	Armadillo repeat containing X-linked 4.	0.681
Arid4a	ENSODEP00000020185	ENSODEP00000019395	ENSODEP00000020185	AT-rich interaction domain 4A.	annotation not available	0.987
Arid4a	MYSM1	ENSODEP00000019395	ENSODEP00000015759	AT-rich interaction domain 4A.	Myb like, SWIRM and MPN domains 1.	0.790
ENSODEP00000001869	ARMCX4	ENSODEP00000001869	ENSODEP00000003545	annotation not available	Armadillo repeat containing X-linked 4.	0.686
ENSODEP00000001869	LRGUK	ENSODEP00000001869	ENSODEP00000011659	annotation not available	Leucine rich repeats and guanylate kinase domain containing.	0.544