GRXCR1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

GRXCR1

Glutaredoxin and cysteine rich domain containing 1. (289 aa)

Predicted Functional Partners:

RIPOR2

0.895

TPRN

0.883

MYO7A

0.857

PLS1

0.818

MYO3A

0.799

ENSODEP00000006338

0.797

MYO7B

0.795

FSCN2

0.790

ENSODEP00000004254

0.784

CAP2

0.784

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAP2	ENSODEP00000004254	ENSODEP00000008623	ENSODEP00000004254	Cyclase associated actin cytoskeleton regulatory protein 2.	annotation not available	0.889
CAP2	ENSODEP00000006338	ENSODEP00000008623	ENSODEP00000006338	Cyclase associated actin cytoskeleton regulatory protein 2.	annotation not available	0.638
CAP2	GRXCR1	ENSODEP00000008623	ENSODEP00000003552	Cyclase associated actin cytoskeleton regulatory protein 2.	Glutaredoxin and cysteine rich domain containing 1.	0.784
CAP2	PLS1	ENSODEP00000008623	ENSODEP00000015126	Cyclase associated actin cytoskeleton regulatory protein 2.	Plastin 1.	0.722
ENSODEP00000004254	CAP2	ENSODEP00000004254	ENSODEP00000008623	annotation not available	Cyclase associated actin cytoskeleton regulatory protein 2.	0.889
ENSODEP00000004254	ENSODEP00000006338	ENSODEP00000004254	ENSODEP00000006338	annotation not available	annotation not available	0.638
ENSODEP00000004254	GRXCR1	ENSODEP00000004254	ENSODEP00000003552	annotation not available	Glutaredoxin and cysteine rich domain containing 1.	0.784
ENSODEP00000004254	PLS1	ENSODEP00000004254	ENSODEP00000015126	annotation not available	Plastin 1.	0.722
ENSODEP00000006338	CAP2	ENSODEP00000006338	ENSODEP00000008623	annotation not available	Cyclase associated actin cytoskeleton regulatory protein 2.	0.638
ENSODEP00000006338	ENSODEP00000004254	ENSODEP00000006338	ENSODEP00000004254	annotation not available	annotation not available	0.638
ENSODEP00000006338	FSCN2	ENSODEP00000006338	ENSODEP00000011308	annotation not available	Fascin actin-bundling protein 2, retinal.	0.774
ENSODEP00000006338	GRXCR1	ENSODEP00000006338	ENSODEP00000003552	annotation not available	Glutaredoxin and cysteine rich domain containing 1.	0.797
ENSODEP00000006338	MYO3A	ENSODEP00000006338	ENSODEP00000004522	annotation not available	Myosin IIIA.	0.767
ENSODEP00000006338	MYO7A	ENSODEP00000006338	ENSODEP00000005419	annotation not available	Myosin VIIA.	0.862
ENSODEP00000006338	MYO7B	ENSODEP00000006338	ENSODEP00000009249	annotation not available	Myosin VIIB.	0.802
ENSODEP00000006338	PLS1	ENSODEP00000006338	ENSODEP00000015126	annotation not available	Plastin 1.	0.766
ENSODEP00000006338	RIPOR2	ENSODEP00000006338	ENSODEP00000018602	annotation not available	RHO family interacting cell polarization regulator 2.	0.887
ENSODEP00000006338	TPRN	ENSODEP00000006338	ENSODEP00000019799	annotation not available	Taperin.	0.904
FSCN2	ENSODEP00000006338	ENSODEP00000011308	ENSODEP00000006338	Fascin actin-bundling protein 2, retinal.	annotation not available	0.774
FSCN2	GRXCR1	ENSODEP00000011308	ENSODEP00000003552	Fascin actin-bundling protein 2, retinal.	Glutaredoxin and cysteine rich domain containing 1.	0.790