STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMO4LIM domain only 4. (165 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
   
 0.960
LDB2
LIM domain binding 2.
   
 0.927
SSBP2
Single stranded DNA binding protein 2.
    
 
 0.920
IDI1
Isopentenyl-diphosphate delta isomerase 1.
    
   0.860
SSBP4
Single stranded DNA binding protein 4.
    
 
 0.852
SSBP3
Single stranded DNA binding protein 3.
    
 
 0.839
ISL2
ISL LIM homeobox 2.
    
  
0.809
ENSODEP00000001418
annotation not available
    
 
 0.746
ENSODEP00000007032
annotation not available
    
 
 0.746
SRF
Serum response factor.
    
 0.733
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.