UST protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UST

Uronyl 2-sulfotransferase. (407 aa)

Predicted Functional Partners:

SDC1

0.806

ENSODEP00000003699

0.741

ENSODEP00000006373

0.712

GPC6

0.712

GPC1

0.712

GPC4

0.712

GPC3

0.712

GPC2

0.712

EGFLAM

0.696

SDC3

0.673

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGFLAM	ENSODEP00000003699	ENSODEP00000023779	ENSODEP00000003699	EGF like, fibronectin type III and laminin G domains.	annotation not available	0.696
EGFLAM	ENSODEP00000006373	ENSODEP00000023779	ENSODEP00000006373	EGF like, fibronectin type III and laminin G domains.	annotation not available	0.745
EGFLAM	GPC1	ENSODEP00000023779	ENSODEP00000014158	EGF like, fibronectin type III and laminin G domains.	Glypican 1.	0.745
EGFLAM	GPC2	ENSODEP00000023779	ENSODEP00000023071	EGF like, fibronectin type III and laminin G domains.	Glypican 2.	0.745
EGFLAM	GPC3	ENSODEP00000023779	ENSODEP00000015450	EGF like, fibronectin type III and laminin G domains.	Glypican 3.	0.745
EGFLAM	GPC4	ENSODEP00000023779	ENSODEP00000015097	EGF like, fibronectin type III and laminin G domains.	Glypican 4.	0.745
EGFLAM	GPC6	ENSODEP00000023779	ENSODEP00000007527	EGF like, fibronectin type III and laminin G domains.	Glypican 6.	0.745
EGFLAM	SDC1	ENSODEP00000023779	ENSODEP00000014540	EGF like, fibronectin type III and laminin G domains.	Syndecan 1.	0.808
EGFLAM	SDC3	ENSODEP00000023779	ENSODEP00000004402	EGF like, fibronectin type III and laminin G domains.	Syndecan 3.	0.709
EGFLAM	UST	ENSODEP00000023779	ENSODEP00000003611	EGF like, fibronectin type III and laminin G domains.	Uronyl 2-sulfotransferase.	0.696
ENSODEP00000003699	EGFLAM	ENSODEP00000003699	ENSODEP00000023779	annotation not available	EGF like, fibronectin type III and laminin G domains.	0.696
ENSODEP00000003699	ENSODEP00000006373	ENSODEP00000003699	ENSODEP00000006373	annotation not available	annotation not available	0.733
ENSODEP00000003699	GPC1	ENSODEP00000003699	ENSODEP00000014158	annotation not available	Glypican 1.	0.756
ENSODEP00000003699	GPC2	ENSODEP00000003699	ENSODEP00000023071	annotation not available	Glypican 2.	0.756
ENSODEP00000003699	GPC3	ENSODEP00000003699	ENSODEP00000015450	annotation not available	Glypican 3.	0.733
ENSODEP00000003699	GPC4	ENSODEP00000003699	ENSODEP00000015097	annotation not available	Glypican 4.	0.756
ENSODEP00000003699	GPC6	ENSODEP00000003699	ENSODEP00000007527	annotation not available	Glypican 6.	0.756
ENSODEP00000003699	SDC1	ENSODEP00000003699	ENSODEP00000014540	annotation not available	Syndecan 1.	0.806
ENSODEP00000003699	SDC3	ENSODEP00000003699	ENSODEP00000004402	annotation not available	Syndecan 3.	0.709
ENSODEP00000003699	UST	ENSODEP00000003699	ENSODEP00000003611	annotation not available	Uronyl 2-sulfotransferase.	0.741