ENSODEP00000003909 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000003909

annotation not available (124 aa)

Predicted Functional Partners:

CASC3

0.739

PRR3

0.654

PRNP

0.618

GNPAT

0.612

LOC101576744

0.576

ENSODEP00000025910

0.576

ENSODEP00000003811

0.464

ENSODEP00000004236

0.464

ENSODEP00000008821

0.464

ENSODEP00000017998

0.464

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASC3	ENSODEP00000003811	ENSODEP00000024401	ENSODEP00000003811	CASC3 exon junction complex subunit.	annotation not available	0.630
CASC3	ENSODEP00000003909	ENSODEP00000024401	ENSODEP00000003909	CASC3 exon junction complex subunit.	annotation not available	0.739
CASC3	ENSODEP00000004236	ENSODEP00000024401	ENSODEP00000004236	CASC3 exon junction complex subunit.	annotation not available	0.630
CASC3	ENSODEP00000008821	ENSODEP00000024401	ENSODEP00000008821	CASC3 exon junction complex subunit.	annotation not available	0.630
CASC3	ENSODEP00000017998	ENSODEP00000024401	ENSODEP00000017998	CASC3 exon junction complex subunit.	annotation not available	0.630
ENSODEP00000003811	CASC3	ENSODEP00000003811	ENSODEP00000024401	annotation not available	CASC3 exon junction complex subunit.	0.630
ENSODEP00000003811	ENSODEP00000003909	ENSODEP00000003811	ENSODEP00000003909	annotation not available	annotation not available	0.464
ENSODEP00000003909	CASC3	ENSODEP00000003909	ENSODEP00000024401	annotation not available	CASC3 exon junction complex subunit.	0.739
ENSODEP00000003909	ENSODEP00000003811	ENSODEP00000003909	ENSODEP00000003811	annotation not available	annotation not available	0.464
ENSODEP00000003909	ENSODEP00000004236	ENSODEP00000003909	ENSODEP00000004236	annotation not available	annotation not available	0.464
ENSODEP00000003909	ENSODEP00000008821	ENSODEP00000003909	ENSODEP00000008821	annotation not available	annotation not available	0.464
ENSODEP00000003909	ENSODEP00000017998	ENSODEP00000003909	ENSODEP00000017998	annotation not available	annotation not available	0.464
ENSODEP00000003909	ENSODEP00000025910	ENSODEP00000003909	ENSODEP00000025910	annotation not available	annotation not available	0.576
ENSODEP00000003909	GNPAT	ENSODEP00000003909	ENSODEP00000006231	annotation not available	Glyceronephosphate O-acyltransferase.	0.612
ENSODEP00000003909	LOC101576744	ENSODEP00000003909	ENSODEP00000025610	annotation not available	annotation not available	0.576
ENSODEP00000003909	PRNP	ENSODEP00000003909	ENSODEP00000025810	annotation not available	Prion protein.	0.618
ENSODEP00000003909	PRR3	ENSODEP00000003909	ENSODEP00000024506	annotation not available	Proline rich 3.	0.654
ENSODEP00000004236	CASC3	ENSODEP00000004236	ENSODEP00000024401	annotation not available	CASC3 exon junction complex subunit.	0.630
ENSODEP00000004236	ENSODEP00000003909	ENSODEP00000004236	ENSODEP00000003909	annotation not available	annotation not available	0.464
ENSODEP00000008821	CASC3	ENSODEP00000008821	ENSODEP00000024401	annotation not available	CASC3 exon junction complex subunit.	0.630