STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000003975annotation not available (221 aa)    
Predicted Functional Partners:
CHMP2A
Charged multivesicular body protein 2A.
   
0.995
Tm9sf1
Transmembrane 9 superfamily member 1.
   
 0.988
ENSODEP00000013927
annotation not available
    
 0.984
ENSODEP00000001811
annotation not available
 
 
 0.982
CHMP1A
Charged multivesicular body protein 1A.
 
 
 0.982
CHMP4C
Charged multivesicular body protein 4C.
   
 0.973
VPS4B
Vacuolar protein sorting 4 homolog B.
   
 0.971
C17orf75
Chromosome 17 open reading frame 75.
    
 0.970
ENSODEP00000020685
annotation not available
   
 0.970
ENSODEP00000000950
annotation not available
   
 0.969
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.