STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000003998annotation not available (213 aa)    
Predicted Functional Partners:
DDX1
DEAD-box helicase 1.
   
 0.995
ENSODEP00000017673
annotation not available
   
 0.993
SLFNL1
Schlafen like 1.
   
 0.990
ENSODEP00000006741
annotation not available
   
 0.988
C2orf49
Chromosome 2 open reading frame 49.
    
 0.987
ENSODEP00000012987
annotation not available
    
 0.984
Fam98b
Family with sequence similarity 98 member B.
    
 0.984
ENSODEP00000021409
annotation not available
    
 0.977
ENSODEP00000000224
annotation not available
    
 0.968
ENSODEP00000010637
annotation not available
    
 0.968
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.