PI15 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

PI15

Peptidase inhibitor 15. (258 aa)

Predicted Functional Partners:

CYB5R4

0.867

GART

0.836

NPL

0.660

HOGA1

0.660

ENSODEP00000010694

0.627

ENSODEP00000026340

0.627

ENSODEP00000000614

0.624

ENSODEP00000002536

0.624

PPAT

0.615

FOLR1

0.607

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYB5R4	GART	ENSODEP00000011041	ENSODEP00000004873	Cytochrome b5 reductase 4.	annotation not available	0.462
CYB5R4	PI15	ENSODEP00000011041	ENSODEP00000004029	Cytochrome b5 reductase 4.	Peptidase inhibitor 15.	0.867
CYB5R4	PPAT	ENSODEP00000011041	ENSODEP00000012738	Cytochrome b5 reductase 4.	Phosphoribosyl pyrophosphate amidotransferase.	0.670
ENSODEP00000000614	ENSODEP00000010694	ENSODEP00000000614	ENSODEP00000010694	annotation not available	annotation not available	0.992
ENSODEP00000000614	ENSODEP00000026340	ENSODEP00000000614	ENSODEP00000026340	annotation not available	annotation not available	0.919
ENSODEP00000000614	GART	ENSODEP00000000614	ENSODEP00000004873	annotation not available	annotation not available	0.425
ENSODEP00000000614	HOGA1	ENSODEP00000000614	ENSODEP00000022233	annotation not available	4-hydroxy-2-oxoglutarate aldolase 1.	0.901
ENSODEP00000000614	NPL	ENSODEP00000000614	ENSODEP00000002561	annotation not available	N-acetylneuraminate pyruvate lyase.	0.902
ENSODEP00000000614	PI15	ENSODEP00000000614	ENSODEP00000004029	annotation not available	Peptidase inhibitor 15.	0.624
ENSODEP00000002536	ENSODEP00000010694	ENSODEP00000002536	ENSODEP00000010694	annotation not available	annotation not available	0.990
ENSODEP00000002536	ENSODEP00000026340	ENSODEP00000002536	ENSODEP00000026340	annotation not available	annotation not available	0.919
ENSODEP00000002536	GART	ENSODEP00000002536	ENSODEP00000004873	annotation not available	annotation not available	0.425
ENSODEP00000002536	HOGA1	ENSODEP00000002536	ENSODEP00000022233	annotation not available	4-hydroxy-2-oxoglutarate aldolase 1.	0.901
ENSODEP00000002536	NPL	ENSODEP00000002536	ENSODEP00000002561	annotation not available	N-acetylneuraminate pyruvate lyase.	0.902
ENSODEP00000002536	PI15	ENSODEP00000002536	ENSODEP00000004029	annotation not available	Peptidase inhibitor 15.	0.624
ENSODEP00000010694	ENSODEP00000000614	ENSODEP00000010694	ENSODEP00000000614	annotation not available	annotation not available	0.992
ENSODEP00000010694	ENSODEP00000002536	ENSODEP00000010694	ENSODEP00000002536	annotation not available	annotation not available	0.990
ENSODEP00000010694	HOGA1	ENSODEP00000010694	ENSODEP00000022233	annotation not available	4-hydroxy-2-oxoglutarate aldolase 1.	0.922
ENSODEP00000010694	NPL	ENSODEP00000010694	ENSODEP00000002561	annotation not available	N-acetylneuraminate pyruvate lyase.	0.923
ENSODEP00000010694	PI15	ENSODEP00000010694	ENSODEP00000004029	annotation not available	Peptidase inhibitor 15.	0.627