ENSODEP00000004064 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000004064

annotation not available (200 aa)

Predicted Functional Partners:

Krit1

0.970

ENSODEP00000005624

0.942

ENSODEP00000017980

0.935

ENSODEP00000026997

0.935

TLN2

0.855

CCM2L

0.847

TLNRD1

0.844

ITGA10

0.833

TLN1

0.829

ITGA2

0.822

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCM2L	ENSODEP00000004064	ENSODEP00000016129	ENSODEP00000004064	CCM2 like scaffold protein.	annotation not available	0.847
CCM2L	Krit1	ENSODEP00000016129	ENSODEP00000001376	CCM2 like scaffold protein.	KRIT1 ankyrin repeat containing.	0.986
CCM2L	TLN1	ENSODEP00000016129	ENSODEP00000019369	CCM2 like scaffold protein.	Talin 1.	0.706
CCM2L	TLN2	ENSODEP00000016129	ENSODEP00000022524	CCM2 like scaffold protein.	Talin 2.	0.706
CCM2L	TLNRD1	ENSODEP00000016129	ENSODEP00000027029	CCM2 like scaffold protein.	Talin rod domain containing 1.	0.706
ENSODEP00000004064	CCM2L	ENSODEP00000004064	ENSODEP00000016129	annotation not available	CCM2 like scaffold protein.	0.847
ENSODEP00000004064	ENSODEP00000005624	ENSODEP00000004064	ENSODEP00000005624	annotation not available	annotation not available	0.942
ENSODEP00000004064	ENSODEP00000017980	ENSODEP00000004064	ENSODEP00000017980	annotation not available	annotation not available	0.935
ENSODEP00000004064	ENSODEP00000026997	ENSODEP00000004064	ENSODEP00000026997	annotation not available	annotation not available	0.935
ENSODEP00000004064	ITGA10	ENSODEP00000004064	ENSODEP00000000835	annotation not available	Integrin subunit alpha 10.	0.833
ENSODEP00000004064	ITGA2	ENSODEP00000004064	ENSODEP00000023804	annotation not available	Integrin subunit alpha 2.	0.822
ENSODEP00000004064	Krit1	ENSODEP00000004064	ENSODEP00000001376	annotation not available	KRIT1 ankyrin repeat containing.	0.970
ENSODEP00000004064	TLN1	ENSODEP00000004064	ENSODEP00000019369	annotation not available	Talin 1.	0.829
ENSODEP00000004064	TLN2	ENSODEP00000004064	ENSODEP00000022524	annotation not available	Talin 2.	0.855
ENSODEP00000004064	TLNRD1	ENSODEP00000004064	ENSODEP00000027029	annotation not available	Talin rod domain containing 1.	0.844
ENSODEP00000005624	ENSODEP00000004064	ENSODEP00000005624	ENSODEP00000004064	annotation not available	annotation not available	0.942
ENSODEP00000005624	ENSODEP00000017980	ENSODEP00000005624	ENSODEP00000017980	annotation not available	annotation not available	0.519
ENSODEP00000005624	ENSODEP00000026997	ENSODEP00000005624	ENSODEP00000026997	annotation not available	annotation not available	0.519
ENSODEP00000005624	ITGA10	ENSODEP00000005624	ENSODEP00000000835	annotation not available	Integrin subunit alpha 10.	0.998
ENSODEP00000005624	ITGA2	ENSODEP00000005624	ENSODEP00000023804	annotation not available	Integrin subunit alpha 2.	0.999