STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chd4Chromodomain helicase DNA binding protein 4. (1911 aa)    
Predicted Functional Partners:
MTA2
Metastasis associated 1 family member 2.
   
 0.997
GATAD2A
GATA zinc finger domain containing 2A.
   
 0.996
MTA1
Metastasis associated 1.
   
 0.995
GATAD2B
GATA zinc finger domain containing 2B.
   
 0.995
CHD3
Chromodomain helicase DNA binding protein 3.
  
0.994
Hdac2
annotation not available
   
 0.993
ENSODEP00000017303
annotation not available
   
 0.993
ENSODEP00000017600
annotation not available
   
 0.993
ENSODEP00000004935
annotation not available
   
 0.990
ENSODEP00000004979
annotation not available
   
 0.990
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.