Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPSF3Cleavage and polyadenylation specific factor 3. (684 aa)    
Predicted Functional Partners:
WDR33
WD repeat domain 33.
   
 0.999
SYMPK
Symplekin.
   
 0.999
CPSF2
Cleavage and polyadenylation specific factor 2.
   
0.999
ENSODEP00000012133
annotation not available
   
 0.999
CPSF1
Cleavage and polyadenylation specific factor 1.
   
 0.999
WDR82
WD repeat domain 82.
   
 0.998
PCF11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.996
ENSODEP00000015143
annotation not available
   
 0.994
CLP1
Cleavage and polyadenylation factor I subunit 1.
   
 0.993
RBBP6
RB binding protein 6, ubiquitin ligase.
    
 0.992
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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