ENSODEP00000004152 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000004152

annotation not available (120 aa)

Predicted Functional Partners:

SRP54

0.987

SRP72

0.987

ENSODEP00000003768

0.973

ENSODEP00000026345

0.973

ENSODEP00000026718

0.973

ENSODEP00000000336

0.971

Srp68

0.971

ENSODEP00000013708

0.968

ENSODEP00000020437

0.968

ENSODEP00000020727

0.968

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000336	ENSODEP00000003768	ENSODEP00000000336	ENSODEP00000003768	annotation not available	annotation not available	0.991
ENSODEP00000000336	ENSODEP00000004152	ENSODEP00000000336	ENSODEP00000004152	annotation not available	annotation not available	0.971
ENSODEP00000000336	ENSODEP00000013708	ENSODEP00000000336	ENSODEP00000013708	annotation not available	annotation not available	0.989
ENSODEP00000000336	ENSODEP00000020437	ENSODEP00000000336	ENSODEP00000020437	annotation not available	annotation not available	0.989
ENSODEP00000000336	ENSODEP00000020727	ENSODEP00000000336	ENSODEP00000020727	annotation not available	annotation not available	0.989
ENSODEP00000000336	ENSODEP00000026345	ENSODEP00000000336	ENSODEP00000026345	annotation not available	annotation not available	0.991
ENSODEP00000000336	ENSODEP00000026718	ENSODEP00000000336	ENSODEP00000026718	annotation not available	annotation not available	0.991
ENSODEP00000000336	SRP54	ENSODEP00000000336	ENSODEP00000006512	annotation not available	Signal recognition particle 54.	0.996
ENSODEP00000000336	SRP72	ENSODEP00000000336	ENSODEP00000016582	annotation not available	Signal recognition particle 72.	0.999
ENSODEP00000003768	ENSODEP00000000336	ENSODEP00000003768	ENSODEP00000000336	annotation not available	annotation not available	0.991
ENSODEP00000003768	ENSODEP00000004152	ENSODEP00000003768	ENSODEP00000004152	annotation not available	annotation not available	0.973
ENSODEP00000003768	ENSODEP00000013708	ENSODEP00000003768	ENSODEP00000013708	annotation not available	annotation not available	0.992
ENSODEP00000003768	ENSODEP00000020437	ENSODEP00000003768	ENSODEP00000020437	annotation not available	annotation not available	0.992
ENSODEP00000003768	ENSODEP00000020727	ENSODEP00000003768	ENSODEP00000020727	annotation not available	annotation not available	0.992
ENSODEP00000003768	SRP54	ENSODEP00000003768	ENSODEP00000006512	annotation not available	Signal recognition particle 54.	0.994
ENSODEP00000003768	SRP72	ENSODEP00000003768	ENSODEP00000016582	annotation not available	Signal recognition particle 72.	0.994
ENSODEP00000003768	Srp68	ENSODEP00000003768	ENSODEP00000015610	annotation not available	annotation not available	0.991
ENSODEP00000004152	ENSODEP00000000336	ENSODEP00000004152	ENSODEP00000000336	annotation not available	annotation not available	0.971
ENSODEP00000004152	ENSODEP00000003768	ENSODEP00000004152	ENSODEP00000003768	annotation not available	annotation not available	0.973
ENSODEP00000004152	ENSODEP00000013708	ENSODEP00000004152	ENSODEP00000013708	annotation not available	annotation not available	0.968