Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000004152annotation not available (120 aa)    
Predicted Functional Partners:
SRP54
Signal recognition particle 54.
   
 0.984
SRP72
Signal recognition particle 72.
   
 0.984
ENSODEP00000020437
annotation not available
   
 0.978
Srp68
annotation not available
   
 0.973
ENSODEP00000026718
annotation not available
   
 0.961
ENSODEP00000013708
annotation not available
   
 0.955
ENSODEP00000020727
annotation not available
   
 0.955
ENSODEP00000000336
annotation not available
   
 0.945
ENSODEP00000003768
annotation not available
   
 0.941
ENSODEP00000026345
annotation not available
   
 0.941
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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