STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NCBP1Nuclear cap binding protein subunit 1. (790 aa)    
Predicted Functional Partners:
PHAX
Phosphorylated adaptor for RNA export.
   
 0.996
SRRT
Serrate, RNA effector molecule.
   
 0.996
ALYREF
Aly/REF export factor.
    
 0.995
UPF1
UPF1 RNA helicase and ATPase.
    
 0.995
NELFE
Negative elongation factor complex member E.
    
 0.995
ENSODEP00000017674
annotation not available
   
 0.994
ENSODEP00000018404
annotation not available
   
 0.994
NELFB
Negative elongation factor complex member B.
   
 0.994
MTREX
Mtr4 exosome RNA helicase.
   
 0.993
SLBP
Stem-loop binding protein.
    
 0.991
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.