STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DERL1Derlin 1. (251 aa)    
Predicted Functional Partners:
UBXN1
UBX domain protein 1.
    
 0.998
VCP
Valosin containing protein.
   
 0.997
AMFR
Autocrine motility factor receptor.
    
 0.997
SYVN1
Synoviolin 1.
    
 0.997
SPATA5
Spermatogenesis associated 5.
   
 0.996
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 0.996
ENSODEP00000008093
annotation not available
   
 0.995
ENSODEP00000011030
annotation not available
    
 0.995
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
    
 0.995
SEL1L3
SEL1L family member 3.
   
 0.994
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.