ENSODEP00000004352 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSODEP00000004352

annotation not available (300 aa)

Predicted Functional Partners:

USP8

0.693

ENSODEP00000022427

0.693

ENSODEP00000001336

0.689

ENSODEP00000012374

0.689

HIP1R

0.678

ENSODEP00000002119

0.601

LOC101583886

0.601

ARFGAP3

0.595

HIP1

0.580

TATDN3

0.538

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARFGAP3	ENSODEP00000004352	ENSODEP00000019548	ENSODEP00000004352	ADP ribosylation factor GTPase activating protein 3.	annotation not available	0.595
ARFGAP3	ENSODEP00000022427	ENSODEP00000019548	ENSODEP00000022427	ADP ribosylation factor GTPase activating protein 3.	annotation not available	0.921
ENSODEP00000001336	ENSODEP00000004352	ENSODEP00000001336	ENSODEP00000004352	annotation not available	annotation not available	0.689
ENSODEP00000002119	ENSODEP00000004352	ENSODEP00000002119	ENSODEP00000004352	annotation not available	annotation not available	0.601
ENSODEP00000004352	ARFGAP3	ENSODEP00000004352	ENSODEP00000019548	annotation not available	ADP ribosylation factor GTPase activating protein 3.	0.595
ENSODEP00000004352	ENSODEP00000001336	ENSODEP00000004352	ENSODEP00000001336	annotation not available	annotation not available	0.689
ENSODEP00000004352	ENSODEP00000002119	ENSODEP00000004352	ENSODEP00000002119	annotation not available	annotation not available	0.601
ENSODEP00000004352	ENSODEP00000012374	ENSODEP00000004352	ENSODEP00000012374	annotation not available	annotation not available	0.689
ENSODEP00000004352	ENSODEP00000022427	ENSODEP00000004352	ENSODEP00000022427	annotation not available	annotation not available	0.693
ENSODEP00000004352	HIP1	ENSODEP00000004352	ENSODEP00000022153	annotation not available	Huntingtin interacting protein 1.	0.580
ENSODEP00000004352	HIP1R	ENSODEP00000004352	ENSODEP00000014428	annotation not available	Huntingtin interacting protein 1 related.	0.678
ENSODEP00000004352	LOC101583886	ENSODEP00000004352	ENSODEP00000002184	annotation not available	annotation not available	0.601
ENSODEP00000004352	TATDN3	ENSODEP00000004352	ENSODEP00000018719	annotation not available	TatD DNase domain containing 3.	0.538
ENSODEP00000004352	USP8	ENSODEP00000004352	ENSODEP00000009387	annotation not available	Ubiquitin specific peptidase 8.	0.693
ENSODEP00000012374	ENSODEP00000004352	ENSODEP00000012374	ENSODEP00000004352	annotation not available	annotation not available	0.689
ENSODEP00000022427	ARFGAP3	ENSODEP00000022427	ENSODEP00000019548	annotation not available	ADP ribosylation factor GTPase activating protein 3.	0.921
ENSODEP00000022427	ENSODEP00000004352	ENSODEP00000022427	ENSODEP00000004352	annotation not available	annotation not available	0.693
HIP1	ENSODEP00000004352	ENSODEP00000022153	ENSODEP00000004352	Huntingtin interacting protein 1.	annotation not available	0.580
HIP1	HIP1R	ENSODEP00000022153	ENSODEP00000014428	Huntingtin interacting protein 1.	Huntingtin interacting protein 1 related.	0.960
HIP1R	ENSODEP00000004352	ENSODEP00000014428	ENSODEP00000004352	Huntingtin interacting protein 1 related.	annotation not available	0.678