Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IMP4IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)    
Predicted Functional Partners:
IMP3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.999
Mphosph10
M-phase phosphoprotein 10.
   
 0.998
UTP4
UTP4 small subunit processome component.
   
 0.998
UTP18
UTP18 small subunit processome component.
   
 0.998
ENSODEP00000002382
annotation not available
   
 0.997
NOP14
NOP14 nucleolar protein.
   
 0.997
NOL6
Nucleolar protein 6.
   
 0.997
NOL10
Nucleolar protein 10.
   
 0.996
BMS1
BMS1 ribosome biogenesis factor.
   
 0.996
WDR43
WD repeat domain 43.
   
 0.996
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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