ENSODEP00000004604 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000004604

annotation not available (201 aa)

Predicted Functional Partners:

TXLNA

0.913

STX4

0.866

STX3

0.823

STX2

0.780

STX1B

0.780

STX1A

0.780

STX11

0.732

LOC101566036

0.728

STX19

0.716

STXBP2

0.670

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000004604	LOC101566036	ENSODEP00000004604	ENSODEP00000024326	annotation not available	Keratin-associated protein 4-12-like.	0.728
ENSODEP00000004604	STX11	ENSODEP00000004604	ENSODEP00000026320	annotation not available	Syntaxin 11.	0.732
ENSODEP00000004604	STX19	ENSODEP00000004604	ENSODEP00000026526	annotation not available	Syntaxin 19.	0.716
ENSODEP00000004604	STX1A	ENSODEP00000004604	ENSODEP00000021515	annotation not available	Syntaxin 1A.	0.780
ENSODEP00000004604	STX1B	ENSODEP00000004604	ENSODEP00000019687	annotation not available	Syntaxin 1B.	0.780
ENSODEP00000004604	STX2	ENSODEP00000004604	ENSODEP00000013439	annotation not available	Syntaxin 2.	0.780
ENSODEP00000004604	STX3	ENSODEP00000004604	ENSODEP00000001965	annotation not available	Syntaxin 3.	0.823
ENSODEP00000004604	STX4	ENSODEP00000004604	ENSODEP00000019647	annotation not available	Syntaxin 4.	0.866
ENSODEP00000004604	STXBP2	ENSODEP00000004604	ENSODEP00000016741	annotation not available	Syntaxin binding protein 2.	0.670
ENSODEP00000004604	TXLNA	ENSODEP00000004604	ENSODEP00000004608	annotation not available	Taxilin alpha.	0.913
LOC101566036	ENSODEP00000004604	ENSODEP00000024326	ENSODEP00000004604	Keratin-associated protein 4-12-like.	annotation not available	0.728
LOC101566036	STX19	ENSODEP00000024326	ENSODEP00000026526	Keratin-associated protein 4-12-like.	Syntaxin 19.	0.796
LOC101566036	STXBP2	ENSODEP00000024326	ENSODEP00000016741	Keratin-associated protein 4-12-like.	Syntaxin binding protein 2.	0.951
LOC101566036	TXLNA	ENSODEP00000024326	ENSODEP00000004608	Keratin-associated protein 4-12-like.	Taxilin alpha.	0.728
STX11	ENSODEP00000004604	ENSODEP00000026320	ENSODEP00000004604	Syntaxin 11.	annotation not available	0.732
STX11	STX19	ENSODEP00000026320	ENSODEP00000026526	Syntaxin 11.	Syntaxin 19.	0.890
STX11	STX1A	ENSODEP00000026320	ENSODEP00000021515	Syntaxin 11.	Syntaxin 1A.	0.861
STX11	STX1B	ENSODEP00000026320	ENSODEP00000019687	Syntaxin 11.	Syntaxin 1B.	0.861
STX11	STX2	ENSODEP00000026320	ENSODEP00000013439	Syntaxin 11.	Syntaxin 2.	0.879
STX11	STX3	ENSODEP00000026320	ENSODEP00000001965	Syntaxin 11.	Syntaxin 3.	0.901