DONSON protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DONSON

Downstream neighbor of SON. (347 aa)

Predicted Functional Partners:

MCM2

0.981

MCM4

0.967

CDC45

0.963

GINS4

0.962

GINS2

0.959

GINS1

0.957

Mcm3

0.949

ENSODEP00000023334

0.949

MCM5

0.947

MCM9

0.939

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC45	DONSON	ENSODEP00000022698	ENSODEP00000004792	Cell division cycle 45.	Downstream neighbor of SON.	0.963
CDC45	ENSODEP00000023334	ENSODEP00000022698	ENSODEP00000023334	Cell division cycle 45.	annotation not available	0.996
CDC45	GINS1	ENSODEP00000022698	ENSODEP00000015362	Cell division cycle 45.	GINS complex subunit 1.	0.992
CDC45	GINS2	ENSODEP00000022698	ENSODEP00000006632	Cell division cycle 45.	GINS complex subunit 2.	0.998
CDC45	GINS4	ENSODEP00000022698	ENSODEP00000008351	Cell division cycle 45.	GINS complex subunit 4.	0.993
CDC45	MCM2	ENSODEP00000022698	ENSODEP00000005225	Cell division cycle 45.	Minichromosome maintenance complex component 2.	0.999
CDC45	MCM4	ENSODEP00000022698	ENSODEP00000006175	Cell division cycle 45.	Minichromosome maintenance complex component 4.	0.999
CDC45	MCM5	ENSODEP00000022698	ENSODEP00000007934	Cell division cycle 45.	Minichromosome maintenance complex component 5.	0.999
CDC45	MCM9	ENSODEP00000022698	ENSODEP00000007292	Cell division cycle 45.	Minichromosome maintenance 9 homologous recombination repair factor.	0.992
CDC45	Mcm3	ENSODEP00000022698	ENSODEP00000012301	Cell division cycle 45.	annotation not available	0.996
DONSON	CDC45	ENSODEP00000004792	ENSODEP00000022698	Downstream neighbor of SON.	Cell division cycle 45.	0.963
DONSON	ENSODEP00000023334	ENSODEP00000004792	ENSODEP00000023334	Downstream neighbor of SON.	annotation not available	0.949
DONSON	GINS1	ENSODEP00000004792	ENSODEP00000015362	Downstream neighbor of SON.	GINS complex subunit 1.	0.957
DONSON	GINS2	ENSODEP00000004792	ENSODEP00000006632	Downstream neighbor of SON.	GINS complex subunit 2.	0.959
DONSON	GINS4	ENSODEP00000004792	ENSODEP00000008351	Downstream neighbor of SON.	GINS complex subunit 4.	0.962
DONSON	MCM2	ENSODEP00000004792	ENSODEP00000005225	Downstream neighbor of SON.	Minichromosome maintenance complex component 2.	0.981
DONSON	MCM4	ENSODEP00000004792	ENSODEP00000006175	Downstream neighbor of SON.	Minichromosome maintenance complex component 4.	0.967
DONSON	MCM5	ENSODEP00000004792	ENSODEP00000007934	Downstream neighbor of SON.	Minichromosome maintenance complex component 5.	0.947
DONSON	MCM9	ENSODEP00000004792	ENSODEP00000007292	Downstream neighbor of SON.	Minichromosome maintenance 9 homologous recombination repair factor.	0.939
DONSON	Mcm3	ENSODEP00000004792	ENSODEP00000012301	Downstream neighbor of SON.	annotation not available	0.949