STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE3AUbiquitin protein ligase E3A. (872 aa)    
Predicted Functional Partners:
TP53
Tumor protein p53.
    
 0.997
UBE2D1
Ubiquitin conjugating enzyme E2 D1.
    
 0.976
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
   
 0.974
TSC2
TSC complex subunit 2.
    
 0.962
HERC2
HECT and RLD domain containing E3 ubiquitin protein ligase 2.
   
0.958
ENSODEP00000012766
annotation not available
    
 0.951
ENSODEP00000015502
annotation not available
    
 0.951
SCRIB
Scribble planar cell polarity protein.
    
 0.950
NFX1
Nuclear transcription factor, X-box binding 1.
     
 0.939
DLG1
Discs large MAGUK scaffold protein 1.
    
 0.936
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.