ENSODEP00000005000 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000005000

annotation not available (270 aa)

Predicted Functional Partners:

MRE11

0.900

SPR

0.888

FDX1

0.887

ENSODEP00000022634

0.887

STOML1

0.882

MED14

0.875

PTGES2

0.875

PTGES

0.875

ENSODEP00000003480

0.874

ENSODEP00000013939

0.874

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000003480	ENSODEP00000005000	ENSODEP00000003480	ENSODEP00000005000	annotation not available	annotation not available	0.874
ENSODEP00000003480	PTGES2	ENSODEP00000003480	ENSODEP00000004646	annotation not available	Prostaglandin E synthase 2.	0.669
ENSODEP00000003480	SPR	ENSODEP00000003480	ENSODEP00000014234	annotation not available	Sepiapterin reductase.	0.922
ENSODEP00000005000	ENSODEP00000003480	ENSODEP00000005000	ENSODEP00000003480	annotation not available	annotation not available	0.874
ENSODEP00000005000	ENSODEP00000013939	ENSODEP00000005000	ENSODEP00000013939	annotation not available	annotation not available	0.874
ENSODEP00000005000	ENSODEP00000022634	ENSODEP00000005000	ENSODEP00000022634	annotation not available	annotation not available	0.887
ENSODEP00000005000	FDX1	ENSODEP00000005000	ENSODEP00000014069	annotation not available	Ferredoxin 1.	0.887
ENSODEP00000005000	MED14	ENSODEP00000005000	ENSODEP00000002000	annotation not available	Mediator complex subunit 14.	0.875
ENSODEP00000005000	MRE11	ENSODEP00000005000	ENSODEP00000020046	annotation not available	MRE11 homolog, double strand break repair nuclease.	0.900
ENSODEP00000005000	PTGES	ENSODEP00000005000	ENSODEP00000023290	annotation not available	Prostaglandin E synthase.	0.875
ENSODEP00000005000	PTGES2	ENSODEP00000005000	ENSODEP00000004646	annotation not available	Prostaglandin E synthase 2.	0.875
ENSODEP00000005000	SPR	ENSODEP00000005000	ENSODEP00000014234	annotation not available	Sepiapterin reductase.	0.888
ENSODEP00000005000	STOML1	ENSODEP00000005000	ENSODEP00000020273	annotation not available	Stomatin like 1.	0.882
ENSODEP00000013939	ENSODEP00000005000	ENSODEP00000013939	ENSODEP00000005000	annotation not available	annotation not available	0.874
ENSODEP00000013939	PTGES2	ENSODEP00000013939	ENSODEP00000004646	annotation not available	Prostaglandin E synthase 2.	0.669
ENSODEP00000013939	SPR	ENSODEP00000013939	ENSODEP00000014234	annotation not available	Sepiapterin reductase.	0.922
ENSODEP00000022634	ENSODEP00000005000	ENSODEP00000022634	ENSODEP00000005000	annotation not available	annotation not available	0.887
ENSODEP00000022634	FDX1	ENSODEP00000022634	ENSODEP00000014069	annotation not available	Ferredoxin 1.	0.797
ENSODEP00000022634	SPR	ENSODEP00000022634	ENSODEP00000014234	annotation not available	Sepiapterin reductase.	0.887
ENSODEP00000022634	STOML1	ENSODEP00000022634	ENSODEP00000020273	annotation not available	Stomatin like 1.	0.743