STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD42Ankyrin repeat domain 42. (454 aa)    
Predicted Functional Partners:
IQUB
IQ motif and ubiquitin domain containing.
  
 0.897
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.878
ENSODEP00000000258
annotation not available
   
  0.877
IFT22
Intraflagellar transport 22.
    
 0.813
IFT88
Intraflagellar transport 88.
  
 0.803
ENSODEP00000005612
annotation not available
    
 0.778
ENSODEP00000015111
annotation not available
    
 0.778
MYO3A
Myosin IIIA.
    
  0.776
MYO3B
Myosin IIIB.
    
  0.776
IFT57
Intraflagellar transport 57.
   
 0.754
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.