Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GOLGA1Golgin A1. (758 aa)    
Predicted Functional Partners:
GCC1
GRIP and coiled-coil domain containing 1.
   
 0.856
ENSODEP00000015392
annotation not available
    
 0.822
ENSODEP00000024666
annotation not available
    
 0.822
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
    
 0.809
GOLGA7B
Golgin A7 family member B.
    
 
 0.754
ENSODEP00000002215
annotation not available
    
 0.745
ENSODEP00000002622
annotation not available
    
 0.745
Wdfy4
WDFY family member 4.
    
 0.745
PIDD1
P53-induced death domain protein 1.
    
 0.743
STX6
Syntaxin 6.
     
 0.728
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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