GOLGA1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GOLGA1

Golgin A1. (758 aa)

Predicted Functional Partners:

VTI1A

0.795

CKAP5

0.792

ENSODEP00000011082

0.787

ENSODEP00000014240

0.787

ENSODEP00000017297

0.787

ENSODEP00000026364

0.787

ENSODEP00000026449

0.787

GCC1

0.780

ENSODEP00000015392

0.779

RAB6A

0.749

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAP5	GOLGA1	ENSODEP00000022353	ENSODEP00000005259	Cytoskeleton associated protein 5.	Golgin A1.	0.792
ENSODEP00000011082	ENSODEP00000015392	ENSODEP00000011082	ENSODEP00000015392	annotation not available	annotation not available	0.803
ENSODEP00000011082	GCC1	ENSODEP00000011082	ENSODEP00000015865	annotation not available	GRIP and coiled-coil domain containing 1.	0.798
ENSODEP00000011082	GOLGA1	ENSODEP00000011082	ENSODEP00000005259	annotation not available	Golgin A1.	0.787
ENSODEP00000011082	RAB6A	ENSODEP00000011082	ENSODEP00000007970	annotation not available	RAB6A, member RAS oncogene family.	0.920
ENSODEP00000011082	VTI1A	ENSODEP00000011082	ENSODEP00000013518	annotation not available	Vesicle transport through interaction with t-SNAREs 1A.	0.786
ENSODEP00000014240	ENSODEP00000015392	ENSODEP00000014240	ENSODEP00000015392	annotation not available	annotation not available	0.803
ENSODEP00000014240	GCC1	ENSODEP00000014240	ENSODEP00000015865	annotation not available	GRIP and coiled-coil domain containing 1.	0.798
ENSODEP00000014240	GOLGA1	ENSODEP00000014240	ENSODEP00000005259	annotation not available	Golgin A1.	0.787
ENSODEP00000014240	RAB6A	ENSODEP00000014240	ENSODEP00000007970	annotation not available	RAB6A, member RAS oncogene family.	0.920
ENSODEP00000014240	VTI1A	ENSODEP00000014240	ENSODEP00000013518	annotation not available	Vesicle transport through interaction with t-SNAREs 1A.	0.786
ENSODEP00000015392	ENSODEP00000011082	ENSODEP00000015392	ENSODEP00000011082	annotation not available	annotation not available	0.803
ENSODEP00000015392	ENSODEP00000014240	ENSODEP00000015392	ENSODEP00000014240	annotation not available	annotation not available	0.803
ENSODEP00000015392	ENSODEP00000017297	ENSODEP00000015392	ENSODEP00000017297	annotation not available	annotation not available	0.803
ENSODEP00000015392	ENSODEP00000026364	ENSODEP00000015392	ENSODEP00000026364	annotation not available	annotation not available	0.803
ENSODEP00000015392	ENSODEP00000026449	ENSODEP00000015392	ENSODEP00000026449	annotation not available	annotation not available	0.803
ENSODEP00000015392	GCC1	ENSODEP00000015392	ENSODEP00000015865	annotation not available	GRIP and coiled-coil domain containing 1.	0.830
ENSODEP00000015392	GOLGA1	ENSODEP00000015392	ENSODEP00000005259	annotation not available	Golgin A1.	0.779
ENSODEP00000015392	RAB6A	ENSODEP00000015392	ENSODEP00000007970	annotation not available	RAB6A, member RAS oncogene family.	0.975
ENSODEP00000015392	VTI1A	ENSODEP00000015392	ENSODEP00000013518	annotation not available	Vesicle transport through interaction with t-SNAREs 1A.	0.792