Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ankrd34cAnkyrin repeat domain 34C. (522 aa)    
Predicted Functional Partners:
TRAF7
TNF receptor associated factor 7.
    
 0.814
ENSODEP00000025351
annotation not available
    
  0.768
SPATA5
Spermatogenesis associated 5.
    
 0.668
PTK7
Protein tyrosine kinase 7 (inactive).
    
  0.661
CTSH
Cathepsin H.
   
 
 0.653
IFT88
Intraflagellar transport 88.
   
 0.651
IFT57
Intraflagellar transport 57.
    
 0.648
IFT22
Intraflagellar transport 22.
    
 0.643
NYAP2
Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2.
   
 0.628
IFT172
Intraflagellar transport 172.
    
 0.623
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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