ENSODEP00000005380 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000005380

annotation not available (356 aa)

Predicted Functional Partners:

TUBB1

0.969

TUBB6

0.962

ENSODEP00000024474

0.962

ENSODEP00000005203

0.961

ENSODEP00000009334

0.959

TUBA4A

0.959

ENSODEP00000023898

0.959

ENSODEP00000009959

0.948

KIF5B

0.945

KIF5A

0.944

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000005203	ENSODEP00000005380	ENSODEP00000005203	ENSODEP00000005380	annotation not available	annotation not available	0.961
ENSODEP00000005203	ENSODEP00000009334	ENSODEP00000005203	ENSODEP00000009334	annotation not available	annotation not available	0.899
ENSODEP00000005203	ENSODEP00000009959	ENSODEP00000005203	ENSODEP00000009959	annotation not available	annotation not available	0.989
ENSODEP00000005203	ENSODEP00000023898	ENSODEP00000005203	ENSODEP00000023898	annotation not available	annotation not available	0.899
ENSODEP00000005203	ENSODEP00000024474	ENSODEP00000005203	ENSODEP00000024474	annotation not available	annotation not available	0.899
ENSODEP00000005203	KIF5A	ENSODEP00000005203	ENSODEP00000002420	annotation not available	Kinesin family member 5A.	0.961
ENSODEP00000005203	KIF5B	ENSODEP00000005203	ENSODEP00000003993	annotation not available	Kinesin family member 5B.	0.960
ENSODEP00000005203	TUBA4A	ENSODEP00000005203	ENSODEP00000009863	annotation not available	Tubulin alpha 4a.	0.994
ENSODEP00000005203	TUBB1	ENSODEP00000005203	ENSODEP00000000203	annotation not available	Tubulin beta 1 class VI.	0.934
ENSODEP00000005380	ENSODEP00000005203	ENSODEP00000005380	ENSODEP00000005203	annotation not available	annotation not available	0.961
ENSODEP00000005380	ENSODEP00000009334	ENSODEP00000005380	ENSODEP00000009334	annotation not available	annotation not available	0.959
ENSODEP00000005380	ENSODEP00000009959	ENSODEP00000005380	ENSODEP00000009959	annotation not available	annotation not available	0.948
ENSODEP00000005380	ENSODEP00000023898	ENSODEP00000005380	ENSODEP00000023898	annotation not available	annotation not available	0.959
ENSODEP00000005380	ENSODEP00000024474	ENSODEP00000005380	ENSODEP00000024474	annotation not available	annotation not available	0.962
ENSODEP00000005380	KIF5A	ENSODEP00000005380	ENSODEP00000002420	annotation not available	Kinesin family member 5A.	0.944
ENSODEP00000005380	KIF5B	ENSODEP00000005380	ENSODEP00000003993	annotation not available	Kinesin family member 5B.	0.945
ENSODEP00000005380	TUBA4A	ENSODEP00000005380	ENSODEP00000009863	annotation not available	Tubulin alpha 4a.	0.959
ENSODEP00000005380	TUBB1	ENSODEP00000005380	ENSODEP00000000203	annotation not available	Tubulin beta 1 class VI.	0.969
ENSODEP00000005380	TUBB6	ENSODEP00000005380	ENSODEP00000000758	annotation not available	Tubulin beta 6 class V.	0.962
ENSODEP00000009334	ENSODEP00000005203	ENSODEP00000009334	ENSODEP00000005203	annotation not available	annotation not available	0.899