SVIL protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SVIL

Supervillin. (2257 aa)

Predicted Functional Partners:

ENSODEP00000014318

0.692

AVIL

0.583

FLII

0.540

ENSODEP00000006546

0.524

VIL1

0.524

MDN1

0.523

SCAF4

0.515

KIF1A

0.514

KIF1B

0.514

ENSODEP00000019742

0.514

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AVIL	ENSODEP00000006546	ENSODEP00000002497	ENSODEP00000006546	Advillin.	annotation not available	0.422
AVIL	SVIL	ENSODEP00000002497	ENSODEP00000005694	Advillin.	Supervillin.	0.583
AVIL	VIL1	ENSODEP00000002497	ENSODEP00000013156	Advillin.	Villin 1.	0.475
ENSODEP00000006546	AVIL	ENSODEP00000006546	ENSODEP00000002497	annotation not available	Advillin.	0.422
ENSODEP00000006546	SVIL	ENSODEP00000006546	ENSODEP00000005694	annotation not available	Supervillin.	0.524
ENSODEP00000014318	ENSODEP00000019742	ENSODEP00000014318	ENSODEP00000019742	annotation not available	annotation not available	0.876
ENSODEP00000014318	KIF1A	ENSODEP00000014318	ENSODEP00000013283	annotation not available	Kinesin family member 1A.	0.876
ENSODEP00000014318	KIF1B	ENSODEP00000014318	ENSODEP00000016941	annotation not available	Kinesin family member 1B.	0.876
ENSODEP00000014318	SVIL	ENSODEP00000014318	ENSODEP00000005694	annotation not available	Supervillin.	0.692
ENSODEP00000019742	ENSODEP00000014318	ENSODEP00000019742	ENSODEP00000014318	annotation not available	annotation not available	0.876
ENSODEP00000019742	KIF1A	ENSODEP00000019742	ENSODEP00000013283	annotation not available	Kinesin family member 1A.	0.913
ENSODEP00000019742	SVIL	ENSODEP00000019742	ENSODEP00000005694	annotation not available	Supervillin.	0.514
FLII	SVIL	ENSODEP00000009870	ENSODEP00000005694	FLII actin remodeling protein.	Supervillin.	0.540
KIF1A	ENSODEP00000014318	ENSODEP00000013283	ENSODEP00000014318	Kinesin family member 1A.	annotation not available	0.876
KIF1A	ENSODEP00000019742	ENSODEP00000013283	ENSODEP00000019742	Kinesin family member 1A.	annotation not available	0.913
KIF1A	KIF1B	ENSODEP00000013283	ENSODEP00000016941	Kinesin family member 1A.	Kinesin family member 1B.	0.961
KIF1A	SVIL	ENSODEP00000013283	ENSODEP00000005694	Kinesin family member 1A.	Supervillin.	0.514
KIF1B	ENSODEP00000014318	ENSODEP00000016941	ENSODEP00000014318	Kinesin family member 1B.	annotation not available	0.876
KIF1B	KIF1A	ENSODEP00000016941	ENSODEP00000013283	Kinesin family member 1B.	Kinesin family member 1A.	0.961
KIF1B	SVIL	ENSODEP00000016941	ENSODEP00000005694	Kinesin family member 1B.	Supervillin.	0.514