STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HELBDNA helicase B. (955 aa)    
Predicted Functional Partners:
RPA3
Replication protein A3.
    
 0.996
RPA1
Replication protein A1.
   
 0.996
MEIOB
Meiosis specific with OB-fold.
   
 0.992
ENSODEP00000005901
annotation not available
   
 0.989
ENSODEP00000013973
annotation not available
   
 0.989
ENSODEP00000024697
annotation not available
   
 0.987
SASS6
SAS-6 centriolar assembly protein.
   
 0.974
STN1
STN1 subunit of CST complex.
   
 0.974
POLA1
DNA polymerase alpha 1, catalytic subunit.
  
 0.956
POLD1
DNA polymerase delta 1, catalytic subunit.
  
 0.956
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.