ENSODEP00000006239 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000006239

annotation not available (139 aa)

Predicted Functional Partners:

TRAPPC1

0.992

TRAPPC5

0.988

TRAPPC12

0.987

TRAPPC11

0.985

ENSODEP00000025153

0.984

TRAPPC9

0.983

TRAPPC6A

0.982

TRAPPC13

0.980

ENSODEP00000000226

0.971

ENSODEP00000022925

0.971

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000226	ENSODEP00000006239	ENSODEP00000000226	ENSODEP00000006239	annotation not available	annotation not available	0.971
ENSODEP00000000226	ENSODEP00000025153	ENSODEP00000000226	ENSODEP00000025153	annotation not available	annotation not available	0.993
ENSODEP00000000226	TRAPPC1	ENSODEP00000000226	ENSODEP00000024238	annotation not available	Trafficking protein particle complex 1.	0.996
ENSODEP00000000226	TRAPPC11	ENSODEP00000000226	ENSODEP00000006514	annotation not available	Trafficking protein particle complex 11.	0.989
ENSODEP00000000226	TRAPPC12	ENSODEP00000000226	ENSODEP00000000340	annotation not available	Trafficking protein particle complex 12.	0.995
ENSODEP00000000226	TRAPPC13	ENSODEP00000000226	ENSODEP00000022738	annotation not available	Trafficking protein particle complex 13.	0.991
ENSODEP00000000226	TRAPPC5	ENSODEP00000000226	ENSODEP00000017180	annotation not available	Trafficking protein particle complex 5.	0.996
ENSODEP00000000226	TRAPPC6A	ENSODEP00000000226	ENSODEP00000011711	annotation not available	Trafficking protein particle complex 6A.	0.985
ENSODEP00000000226	TRAPPC9	ENSODEP00000000226	ENSODEP00000019915	annotation not available	Trafficking protein particle complex 9.	0.986
ENSODEP00000006239	ENSODEP00000000226	ENSODEP00000006239	ENSODEP00000000226	annotation not available	annotation not available	0.971
ENSODEP00000006239	ENSODEP00000022925	ENSODEP00000006239	ENSODEP00000022925	annotation not available	annotation not available	0.971
ENSODEP00000006239	ENSODEP00000025153	ENSODEP00000006239	ENSODEP00000025153	annotation not available	annotation not available	0.984
ENSODEP00000006239	TRAPPC1	ENSODEP00000006239	ENSODEP00000024238	annotation not available	Trafficking protein particle complex 1.	0.992
ENSODEP00000006239	TRAPPC11	ENSODEP00000006239	ENSODEP00000006514	annotation not available	Trafficking protein particle complex 11.	0.985
ENSODEP00000006239	TRAPPC12	ENSODEP00000006239	ENSODEP00000000340	annotation not available	Trafficking protein particle complex 12.	0.987
ENSODEP00000006239	TRAPPC13	ENSODEP00000006239	ENSODEP00000022738	annotation not available	Trafficking protein particle complex 13.	0.980
ENSODEP00000006239	TRAPPC5	ENSODEP00000006239	ENSODEP00000017180	annotation not available	Trafficking protein particle complex 5.	0.988
ENSODEP00000006239	TRAPPC6A	ENSODEP00000006239	ENSODEP00000011711	annotation not available	Trafficking protein particle complex 6A.	0.982
ENSODEP00000006239	TRAPPC9	ENSODEP00000006239	ENSODEP00000019915	annotation not available	Trafficking protein particle complex 9.	0.983
ENSODEP00000022925	ENSODEP00000006239	ENSODEP00000022925	ENSODEP00000006239	annotation not available	annotation not available	0.971