STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBRG1Transforming growth factor beta regulator 1. (409 aa)    
Predicted Functional Partners:
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.932
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.924
KDM6A
Lysine demethylase 6A.
   
 0.901
KDM6B
Lysine demethylase 6B.
   
 0.901
PAXIP1
PAX interacting protein 1.
    
 0.802
ENSODEP00000018086
annotation not available
    
 0.802
ENSODEP00000018741
annotation not available
    
 0.802
ENSODEP00000020684
annotation not available
    
 0.802
ENSODEP00000020799
annotation not available
    
 0.802
ENSODEP00000026427
annotation not available
    
 0.802
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.