STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX25Sorting nexin 25. (969 aa)    
Predicted Functional Partners:
VAPB
VAMP associated protein B and C.
    
 
 0.840
SNX14
Sorting nexin 14.
   
 
 0.802
VAPA
VAMP associated protein A.
    
 
 0.763
CCDC177
Coiled-coil domain containing 177.
      
 0.757
STX8
Syntaxin 8.
    
 0.725
TSPAN2
Tetraspanin 2.
    
   0.693
SNX11
Sorting nexin 11.
     
 0.690
ENSODEP00000011223
annotation not available
    
 
 0.662
ENSODEP00000019360
annotation not available
    
 0.643
SNX27
Sorting nexin 27.
   
  
 0.633
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.