Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TNFRSF1ATNF receptor superfamily member 1A. (415 aa)    
Predicted Functional Partners:
ENSODEP00000006503
annotation not available
   
 0.999
RIPK1
Receptor interacting serine/threonine kinase 1.
   
 0.999
TRADD
TNFRSF1A associated via death domain.
    
 0.999
LTA
Lymphotoxin alpha.
    
 0.999
TNF
Tumor necrosis factor.
    
 0.999
TNFRSF1B
TNF receptor superfamily member 1B.
   
 0.998
TRAF2
TNF receptor associated factor 2.
    
 0.998
NSMAF
Neutral sphingomyelinase activation associated factor.
    
 0.997
CHUK
Component of inhibitor of nuclear factor kappa B kinase complex.
   
 0.997
TRAF1
TNF receptor associated factor 1.
    
 0.995
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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