ENSODEP00000006530 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000006530

annotation not available (141 aa)

Predicted Functional Partners:

BTF3

0.890

TBP

0.886

ENSODEP00000018854

0.881

ENSODEP00000021380

0.881

Fau

0.881

ENSODEP00000001136

0.860

ENSODEP00000025543

0.860

ENSODEP00000007747

0.814

RPL27

0.814

ENSODEP00000025678

0.814

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BTF3	ENSODEP00000001136	ENSODEP00000002415	ENSODEP00000001136	Basic transcription factor 3.	annotation not available	0.982
BTF3	ENSODEP00000006530	ENSODEP00000002415	ENSODEP00000006530	Basic transcription factor 3.	annotation not available	0.890
BTF3	ENSODEP00000007747	ENSODEP00000002415	ENSODEP00000007747	Basic transcription factor 3.	annotation not available	0.957
BTF3	ENSODEP00000018854	ENSODEP00000002415	ENSODEP00000018854	Basic transcription factor 3.	annotation not available	0.944
BTF3	ENSODEP00000021380	ENSODEP00000002415	ENSODEP00000021380	Basic transcription factor 3.	annotation not available	0.944
BTF3	ENSODEP00000025543	ENSODEP00000002415	ENSODEP00000025543	Basic transcription factor 3.	annotation not available	0.982
BTF3	ENSODEP00000025678	ENSODEP00000002415	ENSODEP00000025678	Basic transcription factor 3.	annotation not available	0.957
BTF3	Fau	ENSODEP00000002415	ENSODEP00000024490	Basic transcription factor 3.	annotation not available	0.944
BTF3	RPL27	ENSODEP00000002415	ENSODEP00000024715	Basic transcription factor 3.	Ribosomal protein L27.	0.957
ENSODEP00000001136	BTF3	ENSODEP00000001136	ENSODEP00000002415	annotation not available	Basic transcription factor 3.	0.982
ENSODEP00000001136	ENSODEP00000006530	ENSODEP00000001136	ENSODEP00000006530	annotation not available	annotation not available	0.860
ENSODEP00000001136	ENSODEP00000007747	ENSODEP00000001136	ENSODEP00000007747	annotation not available	annotation not available	0.969
ENSODEP00000001136	ENSODEP00000018854	ENSODEP00000001136	ENSODEP00000018854	annotation not available	annotation not available	0.993
ENSODEP00000001136	ENSODEP00000021380	ENSODEP00000001136	ENSODEP00000021380	annotation not available	annotation not available	0.993
ENSODEP00000001136	ENSODEP00000025678	ENSODEP00000001136	ENSODEP00000025678	annotation not available	annotation not available	0.969
ENSODEP00000001136	Fau	ENSODEP00000001136	ENSODEP00000024490	annotation not available	annotation not available	0.993
ENSODEP00000001136	RPL27	ENSODEP00000001136	ENSODEP00000024715	annotation not available	Ribosomal protein L27.	0.969
ENSODEP00000006530	BTF3	ENSODEP00000006530	ENSODEP00000002415	annotation not available	Basic transcription factor 3.	0.890
ENSODEP00000006530	ENSODEP00000001136	ENSODEP00000006530	ENSODEP00000001136	annotation not available	annotation not available	0.860
ENSODEP00000006530	ENSODEP00000007747	ENSODEP00000006530	ENSODEP00000007747	annotation not available	annotation not available	0.814