ENSODEP00000006563 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000006563

annotation not available (239 aa)

Predicted Functional Partners:

UBR4

0.762

MTHFSD

0.747

ENSODEP00000024666

0.732

ENSODEP00000004709

0.700

ENSODEP00000008843

0.700

ENSODEP00000013915

0.700

ENSODEP00000011836

0.647

ENSODEP00000012279

0.647

UTP15

0.634

WDR6

0.634

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000004709	ENSODEP00000006563	ENSODEP00000004709	ENSODEP00000006563	annotation not available	annotation not available	0.700
ENSODEP00000004709	UBR4	ENSODEP00000004709	ENSODEP00000021293	annotation not available	Ubiquitin protein ligase E3 component n-recognin 4.	0.934
ENSODEP00000006563	ENSODEP00000004709	ENSODEP00000006563	ENSODEP00000004709	annotation not available	annotation not available	0.700
ENSODEP00000006563	ENSODEP00000008843	ENSODEP00000006563	ENSODEP00000008843	annotation not available	annotation not available	0.700
ENSODEP00000006563	ENSODEP00000011836	ENSODEP00000006563	ENSODEP00000011836	annotation not available	annotation not available	0.647
ENSODEP00000006563	ENSODEP00000012279	ENSODEP00000006563	ENSODEP00000012279	annotation not available	annotation not available	0.647
ENSODEP00000006563	ENSODEP00000013915	ENSODEP00000006563	ENSODEP00000013915	annotation not available	annotation not available	0.700
ENSODEP00000006563	ENSODEP00000024666	ENSODEP00000006563	ENSODEP00000024666	annotation not available	annotation not available	0.732
ENSODEP00000006563	MTHFSD	ENSODEP00000006563	ENSODEP00000004570	annotation not available	Methenyltetrahydrofolate synthetase domain containing.	0.747
ENSODEP00000006563	UBR4	ENSODEP00000006563	ENSODEP00000021293	annotation not available	Ubiquitin protein ligase E3 component n-recognin 4.	0.762
ENSODEP00000006563	UTP15	ENSODEP00000006563	ENSODEP00000002519	annotation not available	UTP15 small subunit processome component.	0.634
ENSODEP00000006563	WDR6	ENSODEP00000006563	ENSODEP00000024923	annotation not available	WD repeat domain 6.	0.634
ENSODEP00000008843	ENSODEP00000006563	ENSODEP00000008843	ENSODEP00000006563	annotation not available	annotation not available	0.700
ENSODEP00000008843	UBR4	ENSODEP00000008843	ENSODEP00000021293	annotation not available	Ubiquitin protein ligase E3 component n-recognin 4.	0.934
ENSODEP00000011836	ENSODEP00000006563	ENSODEP00000011836	ENSODEP00000006563	annotation not available	annotation not available	0.647
ENSODEP00000011836	ENSODEP00000012279	ENSODEP00000011836	ENSODEP00000012279	annotation not available	annotation not available	0.984
ENSODEP00000011836	ENSODEP00000024666	ENSODEP00000011836	ENSODEP00000024666	annotation not available	annotation not available	0.952
ENSODEP00000012279	ENSODEP00000006563	ENSODEP00000012279	ENSODEP00000006563	annotation not available	annotation not available	0.647
ENSODEP00000012279	ENSODEP00000011836	ENSODEP00000012279	ENSODEP00000011836	annotation not available	annotation not available	0.984
ENSODEP00000012279	ENSODEP00000024666	ENSODEP00000012279	ENSODEP00000024666	annotation not available	annotation not available	0.952