ENSODEP00000006741 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000006741

annotation not available (408 aa)

Predicted Functional Partners:

DDX1

0.997

C2orf49

0.989

ENSODEP00000003998

0.988

Rtraf

0.988

SLFNL1

0.986

ENSODEP00000012987

0.983

Fam98b

0.983

ENSODEP00000006386

0.981

ENSODEP00000007369

0.981

ENSODEP00000015570

0.981

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2orf49	DDX1	ENSODEP00000012367	ENSODEP00000000684	Chromosome 2 open reading frame 49.	DEAD-box helicase 1.	0.993
C2orf49	ENSODEP00000003998	ENSODEP00000012367	ENSODEP00000003998	Chromosome 2 open reading frame 49.	annotation not available	0.987
C2orf49	ENSODEP00000006386	ENSODEP00000012367	ENSODEP00000006386	Chromosome 2 open reading frame 49.	annotation not available	0.886
C2orf49	ENSODEP00000006741	ENSODEP00000012367	ENSODEP00000006741	Chromosome 2 open reading frame 49.	annotation not available	0.989
C2orf49	ENSODEP00000007369	ENSODEP00000012367	ENSODEP00000007369	Chromosome 2 open reading frame 49.	annotation not available	0.886
C2orf49	ENSODEP00000012987	ENSODEP00000012367	ENSODEP00000012987	Chromosome 2 open reading frame 49.	annotation not available	0.988
C2orf49	ENSODEP00000015570	ENSODEP00000012367	ENSODEP00000015570	Chromosome 2 open reading frame 49.	annotation not available	0.886
C2orf49	Fam98b	ENSODEP00000012367	ENSODEP00000023181	Chromosome 2 open reading frame 49.	Family with sequence similarity 98 member B.	0.988
C2orf49	Rtraf	ENSODEP00000012367	ENSODEP00000014885	Chromosome 2 open reading frame 49.	annotation not available	0.987
C2orf49	SLFNL1	ENSODEP00000012367	ENSODEP00000002653	Chromosome 2 open reading frame 49.	Schlafen like 1.	0.849
DDX1	C2orf49	ENSODEP00000000684	ENSODEP00000012367	DEAD-box helicase 1.	Chromosome 2 open reading frame 49.	0.993
DDX1	ENSODEP00000003998	ENSODEP00000000684	ENSODEP00000003998	DEAD-box helicase 1.	annotation not available	0.995
DDX1	ENSODEP00000006386	ENSODEP00000000684	ENSODEP00000006386	DEAD-box helicase 1.	annotation not available	0.918
DDX1	ENSODEP00000006741	ENSODEP00000000684	ENSODEP00000006741	DEAD-box helicase 1.	annotation not available	0.997
DDX1	ENSODEP00000007369	ENSODEP00000000684	ENSODEP00000007369	DEAD-box helicase 1.	annotation not available	0.918
DDX1	ENSODEP00000012987	ENSODEP00000000684	ENSODEP00000012987	DEAD-box helicase 1.	annotation not available	0.991
DDX1	ENSODEP00000015570	ENSODEP00000000684	ENSODEP00000015570	DEAD-box helicase 1.	annotation not available	0.918
DDX1	Fam98b	ENSODEP00000000684	ENSODEP00000023181	DEAD-box helicase 1.	Family with sequence similarity 98 member B.	0.991
DDX1	Rtraf	ENSODEP00000000684	ENSODEP00000014885	DEAD-box helicase 1.	annotation not available	0.995
ENSODEP00000003998	C2orf49	ENSODEP00000003998	ENSODEP00000012367	annotation not available	Chromosome 2 open reading frame 49.	0.987