BAZ1A protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAZ1A

Bromodomain adjacent to zinc finger domain 1A. (1444 aa)

Predicted Functional Partners:

ENSODEP00000001095

0.939

SMARCA1

0.939

DEK

0.924

ENSODEP00000003060

0.910

ENSODEP00000007591

0.910

HELLS

0.884

ENSODEP00000024608

0.883

ENSODEP00000026551

0.883

CHD1L

0.880

ENSODEP00000019710

0.857

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAZ1A	CHD1L	ENSODEP00000006830	ENSODEP00000003248	Bromodomain adjacent to zinc finger domain 1A.	Chromodomain helicase DNA binding protein 1 like.	0.880
BAZ1A	DEK	ENSODEP00000006830	ENSODEP00000007353	Bromodomain adjacent to zinc finger domain 1A.	DEK proto-oncogene.	0.924
BAZ1A	ENSODEP00000001095	ENSODEP00000006830	ENSODEP00000001095	Bromodomain adjacent to zinc finger domain 1A.	annotation not available	0.939
BAZ1A	ENSODEP00000003060	ENSODEP00000006830	ENSODEP00000003060	Bromodomain adjacent to zinc finger domain 1A.	annotation not available	0.910
BAZ1A	ENSODEP00000007591	ENSODEP00000006830	ENSODEP00000007591	Bromodomain adjacent to zinc finger domain 1A.	annotation not available	0.910
BAZ1A	ENSODEP00000019710	ENSODEP00000006830	ENSODEP00000019710	Bromodomain adjacent to zinc finger domain 1A.	annotation not available	0.857
BAZ1A	ENSODEP00000024608	ENSODEP00000006830	ENSODEP00000024608	Bromodomain adjacent to zinc finger domain 1A.	annotation not available	0.883
BAZ1A	ENSODEP00000026551	ENSODEP00000006830	ENSODEP00000026551	Bromodomain adjacent to zinc finger domain 1A.	annotation not available	0.883
BAZ1A	HELLS	ENSODEP00000006830	ENSODEP00000021633	Bromodomain adjacent to zinc finger domain 1A.	Helicase, lymphoid specific.	0.884
BAZ1A	SMARCA1	ENSODEP00000006830	ENSODEP00000016518	Bromodomain adjacent to zinc finger domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.	0.939
CHD1L	BAZ1A	ENSODEP00000003248	ENSODEP00000006830	Chromodomain helicase DNA binding protein 1 like.	Bromodomain adjacent to zinc finger domain 1A.	0.880
CHD1L	DEK	ENSODEP00000003248	ENSODEP00000007353	Chromodomain helicase DNA binding protein 1 like.	DEK proto-oncogene.	0.693
CHD1L	ENSODEP00000019710	ENSODEP00000003248	ENSODEP00000019710	Chromodomain helicase DNA binding protein 1 like.	annotation not available	0.677
CHD1L	ENSODEP00000024608	ENSODEP00000003248	ENSODEP00000024608	Chromodomain helicase DNA binding protein 1 like.	annotation not available	0.883
CHD1L	ENSODEP00000026551	ENSODEP00000003248	ENSODEP00000026551	Chromodomain helicase DNA binding protein 1 like.	annotation not available	0.883
DEK	BAZ1A	ENSODEP00000007353	ENSODEP00000006830	DEK proto-oncogene.	Bromodomain adjacent to zinc finger domain 1A.	0.924
DEK	CHD1L	ENSODEP00000007353	ENSODEP00000003248	DEK proto-oncogene.	Chromodomain helicase DNA binding protein 1 like.	0.693
DEK	ENSODEP00000001095	ENSODEP00000007353	ENSODEP00000001095	DEK proto-oncogene.	annotation not available	0.778
DEK	ENSODEP00000003060	ENSODEP00000007353	ENSODEP00000003060	DEK proto-oncogene.	annotation not available	0.778
DEK	ENSODEP00000007591	ENSODEP00000007353	ENSODEP00000007591	DEK proto-oncogene.	annotation not available	0.778