STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTF2Replication termination factor 2. (303 aa)    
Predicted Functional Partners:
TRMT1
tRNA methyltransferase 1.
    
   0.914
TRMT1L
tRNA methyltransferase 1 like.
    
 
 0.734
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
  
 0.497
PKDREJ
Polycystin family receptor for egg jelly.
      
 0.485
ENSODEP00000000024
annotation not available
      
 0.480
CCDC130
Coiled-coil domain containing 130.
      
 0.480
ENSODEP00000017298
annotation not available
      
 0.476
TOM1L2
Target of myb1 like 2 membrane trafficking protein.
      
 0.465
SPACA9
Sperm acrosome associated 9.
      
 0.465
KCTD19
Potassium channel tetramerization domain containing 19.
    
 
 0.459
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.