STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNIP1Smad nuclear interacting protein 1. (397 aa)    
Predicted Functional Partners:
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.998
BUD13
BUD13 homolog.
   
 0.998
RBMX2
RNA binding motif protein X-linked 2.
   
 0.998
SF3A1
Splicing factor 3a subunit 1.
    
 0.997
ENSODEP00000018621
annotation not available
    
 0.997
SF3B2
Splicing factor 3b subunit 2.
   
 0.997
SF3B3
Splicing factor 3b subunit 3.
    
 0.996
DHX16
DEAH-box helicase 16.
    
 0.996
SF3B5
Splicing factor 3b subunit 5.
    
 0.996
ZMAT2
Zinc finger matrin-type 2.
    
  0.995
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.