STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000007709annotation not available (334 aa)    
Predicted Functional Partners:
ENSODEP00000015551
annotation not available
   
 0.946
SF3B2
Splicing factor 3b subunit 2.
   
 0.914
ENSODEP00000002853
annotation not available
   
 0.910
HNRNPU
Heterogeneous nuclear ribonucleoprotein U.
   
 0.910
ENSODEP00000003095
annotation not available
   
 0.905
ENSODEP00000004601
annotation not available
   
 0.905
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
   
 0.905
ENSODEP00000013137
annotation not available
   
 0.905
HNRNPD
Heterogeneous nuclear ribonucleoprotein D.
  
0.902
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.893
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.