STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000008200annotation not available (353 aa)    
Predicted Functional Partners:
ENSODEP00000015551
annotation not available
   
 0.959
GSC
Goosecoid homeobox.
    
   0.918
ENSODEP00000012784
annotation not available
    
 0.908
PRKN
Parkin RBR E3 ubiquitin protein ligase.
    
 0.906
SNRPG
Small nuclear ribonucleoprotein G.
   
 0.894
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.893
PTBP1
Polypyrimidine tract binding protein 1.
   
 0.888
CHCHD10
Coiled-coil-helix-coiled-coil-helix domain containing 10.
    
 0.879
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.874
ENSODEP00000001318
annotation not available
   
  0.872
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.