STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB27ARAB27A, member RAS oncogene family. (220 aa)    
Predicted Functional Partners:
SYTL4
Synaptotagmin like 4.
   
 
 0.962
SYTL1
Synaptotagmin like 1.
    
 
 0.961
ENSODEP00000005774
annotation not available
    
 
 0.960
ENSODEP00000005814
annotation not available
    
 
 0.960
SYTL3
Synaptotagmin like 3.
   
 
 0.938
SYTL5
Synaptotagmin like 5.
   
 
 0.922
MYO5A
Myosin VA.
    
 0.911
RAB27B
RAB27B, member RAS oncogene family.
  
 
0.911
ENSODEP00000014562
annotation not available
    
 0.894
RPH3A
Rabphilin 3A.
    
 
 0.860
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.