STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000008467annotation not available (347 aa)    
Predicted Functional Partners:
HNRNPD
Heterogeneous nuclear ribonucleoprotein D.
  
0.950
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.874
TEP1
Telomerase associated protein 1.
    
 0.872
ENSODEP00000015551
annotation not available
  
 0.836
PCBP1
poly(rC) binding protein 1.
   
 0.823
ENSODEP00000018854
annotation not available
   
  0.821
ENSODEP00000021380
annotation not available
   
  0.821
Fau
annotation not available
   
  0.821
SNRPG
Small nuclear ribonucleoprotein G.
   
 0.814
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.813
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.