STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APOFApolipoprotein F. (293 aa)    
Predicted Functional Partners:
APOB
Apolipoprotein B.
   
 
 0.881
APOA2
Apolipoprotein A2.
   
 0.872
FGL1
Fibrinogen like 1.
   
    0.869
ENSODEP00000015018
annotation not available
   
 
 0.867
APOH
Apolipoprotein H.
   
 
 0.854
APOM
Apolipoprotein M.
   
 
 0.809
APOC3
Apolipoprotein C3.
   
 
 0.798
PON1
Paraoxonase 1.
   
 
 0.779
CLU
Clusterin.
     
 0.769
PLTP
Phospholipid transfer protein.
     
 0.768
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.